Open nlisgo opened 11 months ago
rkcook312
commented
10 months ago @fred-atherden is this okay that In the peer review tab there is no reviewer 2 (i assume had no comment on v2) so now reviewer 3 is labelled on the left-side panel as reviewer 2? also some equations are too small to read, can anything be done here?
fred-atherden
commented
10 months ago Oh dear - unfortunately the equations we can't do anything about. It's a platform issue.
Regarding the reviewer numbers, I assume reviewer #2 didn't respond or was not available to review the revised sub so this is OK. I think the side-panel issue is already known as well (and a platform issue).
So I think we should proceed here. @rkcook312 are you OK to publish this one?
rkcook312
commented
10 months ago Thanks @fred-atherden thats okay with me, I'll get this QC'd and published.
fred-atherden
commented
10 months ago @rkcook312 was this one published last week or still yet to be?
rkcook312
commented
10 months ago Thanks @fred-atherden, I probably didn't transfer this to the next column / spreadsheet as it was likely late in the day and so the batch for that day had already been published. Thanks for publishing today!
fred-atherden
commented
10 months ago No worries - I didn't even clock this was the same one when I published/moved it!
[PLACE MANUSCRIPT AND EDITOR DETAILS HERE WHEN AVAILABLE] See step 3
[PLACE PDF URL HERE WHEN AVAILABLE] See step 7
Step 1. Inform bioRxiv
Who can help: @QueenKraken, @nlisgo, @scottaubrey
Step 2. Create preview of manuscript
Who can help: @fred-atherden, @nlisgo, @scottaubrey
Pull request: [PLACE LINK TO PULL REQUEST HERE]
Detailed instructions: https://github.com/elifesciences/enhanced-preprints-data#add-a-manuscript
Step 3: Awaiting public reviews and QC
Who can help: Production team
Who can help: Editorial team
Example
``` "msas": "Genetics and Genomics", "Neuroscience" "msid": "84628" "version": "1" "preprintDoi": "10.1101/2022.10.28.514241" "articleType": "Reviewed Preprint" "status": "Published from the original preprint after peer review and assessment by eLife." "Reviewed Preprint posted": "2023-01-02" "Sent for peer review": "2022-10-28" "Posted to bioRxiv": "2022-11-21" (link: "Go to bioRxiv": "https://www.biorxiv.org/content/10.1101/2022.10.28.514241v1") Editors: Reviewing Editor Michael B Eisen University of California, Berkeley, United States Senior Editor Michael B Eisen University of California, Berkeley, United States ```Step 4: Modify manuscripts.json (no PDF)
Pull request: [PLACE LINK TO PULL REQUEST HERE] #enhanced-preprint comment thread: [PLACE LINK TO COMMENT HERE]
Instructions to modify manuscripts.json
- Visit: https://github.com/elifesciences/enhanced-preprints-client/actions/workflows/publish-manuscript.yaml - Click: Run workflow - Complete the form and click "Run workflow" - A successful run should result in a new pull request at https://github.com/elifesciences/enhanced-preprints-client/pulls - Open the pull request and click the "Ready for review" button to trigger tests - Once the tests pass and you are happy with the changes the PR can be merged Example pull request: https://github.com/elifesciences/enhanced-preprints-client/pull/334/files Once the pull request is merged in it should be available a few minutes later.Request that a doi
Post the following in #enhanced-preprint:
Step 5: Awaiting search reindex
The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.
Additional info
If needed, the jenkins pipeline to reindex search can be triggered sooner. https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/Step 6: Published! Request PDF generation
#enhanced-preprint comment thread: [PLACE LINK TO COMMENT HERE]
Post the following to the #enhanced-preprint on slack:
Step 7: Introduce PDF to data folder and git repo
Detailed instructions: https://github.com/elifesciences/enhanced-preprints-data#add-a-pdf
Step 8: Add PDF url to manuscripts.json
[PLACE LINK TO PULL REQUEST HERE]
Instructions to add PDF url to manuscripts.json
- Visit: https://github.com/elifesciences/enhanced-preprints-client/actions/workflows/add-pdf-url-to-manuscript.yaml - Click: Run workflow - Complete the form and click "Run workflow" - A successful run should result in a new pull request at https://github.com/elifesciences/enhanced-preprints-client/pulls - Open the pull request and click the "Ready for review" button to trigger tests - Once the tests pass and you are happy with the changes the PR can be merged Example pull request: https://github.com/elifesciences/enhanced-preprints-client/pull/397/files Once the pull request is merged in it should be available a few minutes later.Step 9: Done!