MSID: 89261 Version: 2 DOI: 10.1101/2023.07.18.549509

[nlisgo]

MSID: 89261

Version: 2

Preprint DOI: https://doi.org/10.1101/2023.07.18.549509

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

• DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=89261
• New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
• Reviews on sciety: https://sciety.org/articles/activity/10.1101/2023.07.18.549509

For trouble shooting (e.g. no Docmaps available):

• DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
• Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
• Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
• Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

• QC preview: https://prod--epp.elifesciences.org/previews/89261v2
• Update ticket with any problems (add blocked label)
• Add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
• Move card to next column
• (At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

• Preprint DOI : https://doi.org/10.1101/2023.07.18.549509
• Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/89261/v2/reviews
• To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

• Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

• PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Detailed instructions: https://github.com/elifesciences/enhanced-preprints-data#add-a-pdf

Step 6: Add PDF url to manuscripts.json

Pull request created to enhanced-preprint-client

Instructions to add PDF url to manuscripts.json

- Visit: https://github.com/elifesciences/enhanced-preprints-client/actions/workflows/add-pdf-url-to-manuscript.yaml - Click: Run workflow - Complete the form and click "Run workflow" - A successful run should result in a new pull request at https://github.com/elifesciences/enhanced-preprints-client/pulls - Open the pull request and click the "Ready for review" button to trigger tests - Once the tests pass and you are happy with the changes the PR can be merged Example pull request: https://github.com/elifesciences/enhanced-preprints-client/pull/397/files Once the pull request is merged in it should be available a few minutes later.

Step 9: Done!

• [ ] Kettle is on!

[JGilbert-eLife]

Looks like a screw-up at bioRxiv meant Francisca Molina-Jiménez and Pedro Majano's affiliations weren't captured:

elocations missing from references; reviews not available yet.

[fred-atherden]

Urgh this is what they've done:

<contrib contrib-type="author">
<name><surname>Molina-Jim&#x00E9;nez</surname><given-names>Francisca</given-names></name>
<xref ref-type="aff" rid="a6 a7">6&#x2013;7</xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Majano</surname><given-names>Pedro</given-names></name>
<xref ref-type="aff" rid="a6 a7 a8 a9">6&#x2013;9</xref>
</contrib>

I've uploaded a corrected package (each one a separate xref) to s3://prod-elife-epp-meca/89261-v2-meca.zip. Should update once the issues with DataHub pipelines is resolved.

[fred-atherden]

@acollings, have the reviews been posted for this one? I can't see them anywhere.

[acollings]

Sorry @fred-atherden I got confused. I'll move this back a step.

[fred-atherden]

No worries - thanks!