MSID: 90191 Version: 2 DOI: 10.1101/2023.08.02.551607

[nlisgo]

MSID: 90191

Version: 2

Preprint DOI: https://doi.org/10.1101/2023.08.02.551607

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

• DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=90191
• New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
• Reviews on sciety: https://sciety.org/articles/activity/10.1101/2023.08.02.551607

For trouble shooting (e.g. no Docmaps available):

• DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
• Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
• Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
• Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

• QC preview: https://prod--epp.elifesciences.org/previews/90191v2
• Update ticket with any problems (add blocked label)
• When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
• Move card to next column
• (At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

• Preprint DOI : https://doi.org/10.1101/2023.08.02.551607
• Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/90191/v2/reviews
• To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

• Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

• PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

• [ ] Kettle is on!

[naushinthomson]

@fred-atherden Reviews unavailable

[fred-atherden]

There are three preprint versions. Looks like version 2 was posted on the 5th November and version 3 was posted a few days later on the 8th.

bioRxiv only have meca packages for versions 1 and 3: curl "https://api.biorxiv.org/meca_index/elife/10.1101/2023.08.02.551607" | jq

{
  "status": [
    {
      "count": 2,
      "messages": "ok"
    }
  ],
  "results": [
    {
      "msid": "551607",
      "tdm_doi": "10.1101/2023.08.02.551607",
      "ms_version": "1",
      "filedate": "2023-06-15",
      "tdm_path": "s3://transfers-elife/biorxiv_Current_Content/August_2023/06_Aug_23_Batch_1695/7f5ee837-6c11-1014-ac25-b653835a7b6e.meca",
      "transfer_type": "api"
    },
    {
      "msid": "551607",
      "tdm_doi": "10.1101/2023.08.02.551607",
      "ms_version": "3",
      "filedate": "2023-06-15",
      "tdm_path": "s3://transfers-elife/biorxiv_Current_Content/November_2023/09_Nov_23_Batch_1790/753db841-6c72-1014-9772-a558a02176cb.meca",
      "transfer_type": "api"
    }
  ]
}

@acollings, do you know why the authors posted a v3 a few days after the v2? Should we use the v3 instead? If so, please could the reviews be moved over to the v3?

[acollings]

Hi @fred-atherden no idea, but I agree with using V3: reviews moved across

[fred-atherden]

Ready to check