MSID: 95488 Version: 1 DOI: 10.1101/2023.12.18.572223

[nlisgo]

MSID: 95488

Version: 1

Preprint DOI: https://doi.org/10.1101/2023.12.18.572223

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

• DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=95488
• New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
• Reviews on sciety: https://sciety.org/articles/activity/10.1101/2023.12.18.572223

For trouble shooting (e.g. no Docmaps available):

• DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
• Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
• Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
• Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

• QC preview: https://prod--epp.elifesciences.org/previews/95488v1
• Update ticket with any problems (add blocked label)
• When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
• Move card to next column
• (At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

• Preprint DOI : https://doi.org/10.1101/2023.12.18.572223
• Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/95488/v1/reviews
• To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

• Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

• PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

• [ ] Kettle is on!

[naushinthomson]

@fred-atherden Two authors have no affiliation, is this ok? It matches the preprint:

[fred-atherden]

Well spotted @naushinthomson. No I think we need to ensure they have affiliations. Are you OK to reach out to the corresponding authors and ask for them?

[naushinthomson]

Will do!

[naushinthomson]

@fred-atherden Actually I just noticed that we have the affiliations on eJP, is that something you can update in a MECA package or do we need the authors to update on bioRxiv?

[fred-atherden]

Thanks Naushin - I saw there was an affiliation in eJP, but I think it would still be good to confirm what it should be with the authors first (we just have University of Leicester - no department (is it "The Ernest and Helen Scott Haematological Research Institute, Leicester Cancer Research Centre, College of Life Sciences"?), and eJP only supports one affiliation, not multiple which they may have)

[naushinthomson]

Ok will do!

[fred-atherden]

(chased)

[fred-atherden]

Authors confirm that "Sandrine and Robert should have the same affiliation as Martin Dyer". Modified package uploaded and now need to wait for datahub to recognise the change in the spreadsheet and update the meca path in the docmap.