MSID: 88837 Version: 2 DOI: 10.1101/2023.04.12.536635

[nlisgo]

MSID: 88837

Version: 2

Preprint DOI: https://doi.org/10.1101/2023.04.12.536635

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

• DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=88837
• New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
• Reviews on sciety: https://sciety.org/articles/activity/10.1101/2023.04.12.536635

For trouble shooting (e.g. no Docmaps available):

• DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
• Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
• Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
• Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

• QC preview: https://prod--epp.elifesciences.org/previews/88837v2
• Update ticket with any problems (add blocked label)
• When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
• Move card to next column
• (At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

• Preprint DOI : https://doi.org/10.1101/2023.04.12.536635
• Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/88837/v2/reviews
• To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

• Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

• PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

• [ ] Kettle is on!

[fred-atherden]

Schematron:

error: This journal reference (id c50) has no article-title element.

[naushinthomson]

@fred-atherden Reviewer 1's comments include this - can we format it better?

[fred-atherden]

Thanks for flagging @naushinthomson.

@acollings, could you assist with the above please? Presumably the presence of hashtags at the start of the line mean that this is being treated as a header as per markdown formatting. If we were maybe to add a space before the hashtags, I think it would no longer be treated as headers?:

[acollings]

Hi @naushinthomson and @fred-atherden I think Ed Office already saw this was a problem and added spaces. I can see the review has been edited already to add spaces. So perhaps we have to see what it looks like on Monday?

[fred-atherden]

Thanks @acollings, I'm still not seeing a space in the hypothesis comment though, maybe leading spaces are stripped by default by hypothesis? If that were the case I think we'd still run into the issue unfortunately.

Could we try adding a no break space - - instead?

[acollings]

Wow, @fred-atherden I never knew there was a "no break space"! This is what it looked like before so I think something is getting stripped:

I've now tried the no break space...

[fred-atherden]

Thanks Andy - let's see what it looks like on Monday! (Aren't you supposed to be on holiday!?)

[acollings]

Ha, yes, I am, honest :-)

[JGilbert-eLife]

Unfortunately, it looks like the space has still been stripped out of Hypothesis:

[acollings]

Hi @JGilbert-eLife I've just tried something else. Take a look and see if it'll work?!

[JGilbert-eLife]

Looks good to me! I'll need to pull this across again tomorrow.