MSID: 97033 Version: 1 DOI: 10.1101/2024.03.05.583500

nlisgo commented 7 months ago

MSID: 97033

Version: 1

Preprint DOI: https://doi.org/10.1101/2024.03.05.583500

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=97033
New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
Reviews on sciety: https://sciety.org/articles/activity/10.1101/2024.03.05.583500

For trouble shooting (e.g. no Docmaps available):

DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

QC preview: https://prod--epp.elifesciences.org/previews/97033v1
Update ticket with any problems (add blocked label)
When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
Move card to next column
(At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

Preprint DOI : https://doi.org/10.1101/2024.03.05.583500
Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/97033/v1/reviews
To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

[ ] Kettle is on!

fred-atherden commented 6 months ago

@acollings, looks like we don't have the MECA package for this one. The reviews were posted to the v1 and It looks like the authors posted preprint versions as follows:

Version 1 March 07, 2024 - (looks to match submission)
Version 2 March 07, 2024 - (Author revision note: Title change; fixed minor typos; revised discussion)
Version 3 March 17, 2024 - (Author revision note: Fixed minor errors; fixed one significant typo)

before I go to bioRxiv to ask for a MECA package for the v1, I just want to double check which version we should be using here. Could you confirm?

fred-atherden commented 6 months ago

Just noting, we (currently) have access to two packages:

https://api.biorxiv.org/meca_index/elife/10.1101/2024.03.05.583500

{
  "status": [
    {
      "count": 2,
      "messages": "ok"
    }
  ],
  "results": [
    {
      "msid": "583500",
      "tdm_doi": "10.1101/2024.03.05.583500",
      "ms_version": "2",
      "filedate": "2024-02-15",
      "tdm_path": "s3://transfers-elife/biorxiv_Current_Content/March_2024/09_Mar_24_Batch_1911/4b305594-795b-1014-9436-9ef1fd918880.meca",
      "transfer_type": "api"
    },
    {
      "msid": "583500",
      "tdm_doi": "10.1101/2024.03.05.583500",
      "ms_version": "3",
      "filedate": "2024-02-15",
      "tdm_path": "s3://transfers-elife/biorxiv_Current_Content/March_2024/18_Mar_24_Batch_1920/cd2a8419-71c8-1014-8e62-9ae88a149fdf.meca",
      "transfer_type": "api"
    }
  ]
}

acollings commented 6 months ago

Hi @fred-atherden I'd use V3. Shall I move the reviews across at this point? Thanks!

fred-atherden commented 6 months ago

Good to know - yes please thanks @acollings!

acollings commented 6 months ago

These have been moved, @fred-atherden!

fred-atherden commented 6 months ago

Thanks!

This one is now ready to check (since I've loaded the v3 meca)

elifesciences / enhanced-preprints-import