MSID: 89582 Version: 2 DOI: 10.1101/2023.06.16.545247

[fred-atherden]

MSID: 89582

Version: 2

Preprint DOI: https://doi.org/10.1101/2023.06.16.545247

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

• DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=89582
• New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
• Reviews on sciety: https://sciety.org/articles/activity/10.1101/2023.06.16.545247

For trouble shooting (e.g. no Docmaps available):

• DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
• Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
• Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
• Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

• QC preview: https://prod--epp.elifesciences.org/previews/89582v2
• Update ticket with any problems (add blocked label)
• When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
• Move card to next column
• (At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

• Preprint DOI : https://doi.org/10.1101/2023.06.16.545247
• Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/89582/v2/reviews
• To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

• Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

• PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

• [ ] Kettle is on!

[elife-bot]

- error: [journal-ref-article-title] This journal reference (id c21) has no article-title element.
- error: [sec-empty] sec element is not populated with any content. Either there's a mistake or the section should be removed.
! warning: [journal-ref-text-content] This journal reference (id c68) has untagged textual content - ):rs3. doi:. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c69) has untagged textual content - .1-16.6.14. 855 doi:. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c94) has untagged textual content - ):529-545. doi:. Is it tagged correctly?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 1 - Figure supplement 1'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Notch acts upstream of Su(H); minor changes in hemocyte numbers in Su(H)S269 phospho-mutants'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 1 - Figure supplement 2'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Representative images for the various settings'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 2 - Figure supplement 1'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 3 – Figure supplement 1'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Overview of the results from the kinase screen'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 3 – Figure supplement 2'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'MS/MS spectra of the phosphorylated Su(H) peptide'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 4 – Figure supplement 1'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Conservation of Pkc53E and generation of an activated Pkc53EEDDD isoform'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 5 – Figure supplement 1'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Expression of Su(H)VP16-myc is not influenced by PMA or STAU'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 6 – Figure supplement 1'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'The Pkc53EΔ28 allele is a null mutant'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 6 – Figure supplement 2'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Representative images for the various settings.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 7 – Figure supplement 1'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Representative images for the various settings.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 7 – Figure supplement 2'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Raw blots of co-IP'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 8 – Figure supplement 1'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Pkc53E is expressed in hemocytes.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 9 – Figure supplement 1'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Pkc53EΔ28 is sensitive to wasp infestation'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 9 – Figure supplement 2'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Representative images for the various settings.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 3 – supplement Table 1'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 3 – supplement Table 2'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 3 – supplement Table 3'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 3 – supplement Table 4'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 1 source data'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Raw data and statistical analysis'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 2 source data'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Raw data and statistical analysis'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 4 source data'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Raw data and statistical analysis'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 6 source data'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Raw data and statistical analysis'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 7 source data'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Raw data and statistical analysis'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Figure 9 source data'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in italic - 'Raw data and statistical analysis'. Is this correct?
+ info: [article-version-flag] This is preprint version 1.2.