MSID: 101577 Version: 1 DOI: 10.1101/2024.07.18.602927

fred-atherden commented 1 month ago

MSID: 101577

Version: 1

Preprint DOI: https://doi.org/10.1101/2024.07.18.602927

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=101577
New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
Reviews on sciety: https://sciety.org/articles/activity/10.1101/2024.07.18.602927

For trouble shooting (e.g. no Docmaps available):

DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

QC preview: https://prod--epp.elifesciences.org/previews/101577v1
Update ticket with any problems (add blocked label)
When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
Move card to next column
(At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

Preprint DOI : https://doi.org/10.1101/2024.07.18.602927
Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/101577/v1/reviews
To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

[ ] Kettle is on!

elife-bot commented 3 weeks ago

- error: [journal-ref-article-title] This journal reference (id c12) has no article-title element.
- error: [journal-ref-article-title] This journal reference (id c43) has no article-title element.
- error: [journal-ref-article-title] This journal reference (id c45) has no article-title element.
- error: [journal-ref-article-title] This journal reference (id c58) has no article-title element.
! warning: [journal-ref-text-content] This journal reference (id c1) has untagged textual content - Jul 29;. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c2) has untagged textual content - Jan 2;; . Epub 2016 Nov 1. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c3) has untagged textual content - Jul 11;. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c4) has untagged textual content - Oct 14;. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c5) has untagged textual content - Oct 15;. Is it tagged correctly?
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! warning: [journal-ref-text-content] This journal reference (id c7) has untagged textual content - Mar 20;; . Epub 2012 Mar 5. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c8) has untagged textual content - Aug;; . Epub 2019 Mar PMID: . Is it tagged correctly?
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! warning: [journal-ref-text-content] This journal reference (id c43) has untagged textual content - Feb 15;; . Epub 2010 Dec 15.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c43) has untagged textual content - Erratum in: ; Apr 15;; . Veldkamp, Wouter [corrected to Veldkamp, Wouter J H]. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c44) has untagged textual content - Jul;. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c45) has untagged textual content - May 19;. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c45) has untagged textual content - Erratum in: ; Mar 7;. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c47) has untagged textual content - Mar 20;; . Epub 2009 Mar 5. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c48) has untagged textual content - Sep 17;; . Epub 2021 Sep 17. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c49) has untagged textual content - Oct 6;. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c50) has untagged textual content - Mar 1;; . Epub 2012 Dec 20. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c51) has untagged textual content - Mar 17;; . Epub 2016 Feb 18. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c52) has untagged textual content - Feb 28;; . Epub 2018 Feb 14. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c53) has untagged textual content - Mar 17;. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c54) has untagged textual content - May 2;; . Epub 2018 Apr 12. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c55) has untagged textual content - Mar;; . Epub 2018 Jan 28. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c56) has untagged textual content - Jun 19;. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c57) has untagged textual content - May;. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c58) has untagged textual content - Mar;; . Epub 2020 Feb 3.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c58) has untagged textual content - Erratum in: ; Feb 24;: PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c59) has untagged textual content - Dec 27;; . Epub 2012 Dec 13. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c61) has untagged textual content - Apr 15;; . Epub 2009 Feb 23. PMID: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c62) has untagged textual content - Sep 19;. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c63) has untagged textual content - Feb 17;. Is it tagged correctly?
! warning: [mixed-citation-person-group-flag-2] mixed-citation in reference (id=c12) does not have an author person-group. Is that correct?
! warning: [mixed-citation-person-group-flag-2] mixed-citation in reference (id=c43) does not have an author person-group. Is that correct?
! warning: [mixed-citation-person-group-flag-2] mixed-citation in reference (id=c45) does not have an author person-group. Is that correct?
! warning: [mixed-citation-person-group-flag-2] mixed-citation in reference (id=c58) does not have an author person-group. Is that correct?
+ info: [article-version-flag] This is preprint version 1.2.

rkcook312 commented 2 weeks ago

Hi @fred-atherden, not sure what's up with this one not completing in temporal, the error message mentions ref 55 author 7 (?) but this looks fine on XML no warning or error on schematron?

fred-atherden commented 2 weeks ago

@rkcook312, I think the issue is that Yu needs to be placed within surname instead of next to it in reference 56 (with ID c56):

i.e.

<string-name>Yu<surname></surname> <given-names>T</given-names></string-name>

changed to:

<string-name><surname>Yu</surname> <given-names>T</given-names></string-name>

I'll add an error to the schematron for this

rkcook312 commented 2 weeks ago

Ah that makes more sense, thanks, yes please a schematron error would be good here.

rkcook312 commented 2 weeks ago

emailed author for WOS update

fred-atherden commented 2 weeks ago

Chased

fred-atherden commented 1 week ago

chased again

fred-atherden commented 1 week ago

confirmed Ok to proceed

elifesciences / publish-reviewed-preprints-issues