MSID: 98716 Version: 2 DOI: 10.1101/2024.01.26.577406

[fred-atherden]

MSID: 98716

Version: 2

Preprint DOI: https://doi.org/10.1101/2024.01.26.577406

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

• DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=98716
• New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
• Reviews on sciety: https://sciety.org/articles/activity/10.1101/2024.01.26.577406

For trouble shooting (e.g. no Docmaps available):

• DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
• Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
• Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
• Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

• QC preview: https://prod--epp.elifesciences.org/previews/98716v2
• Update ticket with any problems (add blocked label)
• When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
• Move card to next column
• (At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

• Preprint DOI : https://doi.org/10.1101/2024.01.26.577406
• Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/98716/v2/reviews
• To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

• Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

• PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

• [ ] Kettle is on!

[elife-bot]

- error: [journal-ref-article-title] This journal reference (id c11) has no article-title element.
! warning: [journal-ref-text-content] This journal reference (id c5) has untagged textual content - . eCollection 2018 Sep.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c8) has untagged textual content - ). microorganisms7090336. doi: . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c14) has untagged textual content - . eCollection 2016 Jan.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c20) has untagged textual content - . Epub 2009 Aug 9.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c27) has untagged textual content - . Epub 2017 Feb 21.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c33) has untagged textual content - -9. doi: ; . Epub 2011 Nov 1.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c42) has untagged textual content - . Epub 2014 Mar 12.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c43) has untagged textual content - . Epub 2016 Mar 4.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c47) has untagged textual content - . Epub 2006 Jul 20.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c48) has untagged textual content - . Epub 2008 Jan 24.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c50) has untagged textual content - . Epub 2017 Dec 28.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c51) has untagged textual content - . Epub 2017 Mar 2.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c52) has untagged textual content - . Epub 2008 Oct 30.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c53) has untagged textual content - . Epub 2005 Aug 1.. Is it tagged correctly?
! warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'AUTHOR SUMMARY'
! warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'MOVIES'
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 1'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018385'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Fluorescent Ecc is blocked in the anterior part of the larval intestine then vanishes.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 2'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018427'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Fluorescent Bt is blocked in the anterior part of the larval intestine then vanishes.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 3'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.26355076'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Dextran-TexasRed is concomitantly blocked Fluorescent Bt in the anterior part of the larval intestine then released posteriorly following bacterial clearance.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 4'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018442'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Fluorescent Lp is not blocked in the anterior part of the larval intestine and persists in the posterior midgut.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 5'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.26355196'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Bt at a low concentration is not blocked in the anterior part of the larval intestine, persists in the posterior midgut and the larva does not die.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 6'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018463'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Fluorescent Ecc is not blocked in the anterior part of the TrpA1 mutant larval intestine and persists in the posterior midgut.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 7'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018472'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Fluorescent Ecc is not blocked in the anterior part of the Dh31 mutant larval intestine and persists in the posterior midgut.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 8'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018481'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Fluorescent Lp is blocked in the anterior part of the larval intestine following treatment with hCGRP.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 9'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.27100474'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Robust muscular contraction waves are observed in intestines of Dh31 mutant larvae previously fed with Ecc.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 10'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.27100483'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Robust muscular contraction waves are observed in intestines of Dh31 mutant larvae.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 11'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018496'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'TARMsT2 are attached to the longitudinal gut muscles.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 12'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018499'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Fluorescent Bt is blocked in the anterior part of the PGRP-LC mutant larval intestine and persists.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 13'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018505'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Fluorescent Ecc is blocked in the anterior part of the PGRP-LE mutant larval intestine and persists.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 14'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018517'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Fluorescent Ecc is blocked in the anterior part of the Dredd mutant larval intestine and persists.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 15'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018529'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Fluorescent Bt is blocked in the anterior part of the Rel mutant larval intestine and persists.'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Movie 16'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'DOI: 10.6084/m9.figshare.25018538'. Is this correct?
! warning: [p-all-bold] Content of p element is entirely in bold - 'Fluorescent Ecc is blocked in the anterior part of the Rel mutant larval intestine and persists.'. Is this correct?
+ info: [article-version-flag] This is preprint version 1.3.