MSID: 94685 Version: 2 DOI: 10.1101/2023.12.06.570437

[fred-atherden]

MSID: 94685

Version: 2

Preprint DOI: https://doi.org/10.1101/2023.12.06.570437

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

• DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=94685
• New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
• Reviews on sciety: https://sciety.org/articles/activity/10.1101/2023.12.06.570437

For trouble shooting (e.g. no Docmaps available):

• DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
• Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
• Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
• Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

• QC preview: https://prod--epp.elifesciences.org/previews/94685v2
• Update ticket with any problems (add blocked label)
• When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
• Move card to next column
• (At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

• Preprint DOI : https://doi.org/10.1101/2023.12.06.570437
• Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/94685/v2/reviews
• To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

• Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

• PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

• [ ] Kettle is on!

[elife-bot]

- error: [aff-institution-wrap-test-3] institution-wrap cannot contain text. It can only contain elements.
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- error: [body-footnote] This preprint has footnotes appended to the content. EPP cannot render these, so they need adding to the text.
! warning: [journal-ref-text-content] This journal reference (id c23) has untagged textual content - ):obz016.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c53) has untagged textual content - , Moggi-Cecchi J, Matthews GJ, Bailey SE. . Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c54) has untagged textual content - ):gmr18482-gmr18482.. Is it tagged correctly?
! warning: [journal-ref-text-content] This journal reference (id c87) has untagged textual content - (6572):eabl4336.. Is it tagged correctly?
! warning: [ref-year-value-2] Ref with id c80 has a year element which does not contain a digit. Is it correct? (it's acceptable for this element to contain 'no date' or equivalent non-numerical information relating to year of publication)
! warning: [ref-year-value-2] Ref with id c85 has a year element which does not contain a digit. Is it correct? (it's acceptable for this element to contain 'no date' or equivalent non-numerical information relating to year of publication)
! warning: [ref-year-value-2] Ref with id c96 has a year element which does not contain a digit. Is it correct? (it's acceptable for this element to contain 'no date' or equivalent non-numerical information relating to year of publication)
! warning: [ref-year-value-2] Ref with id c98 has a year element which does not contain a digit. Is it correct? (it's acceptable for this element to contain 'no date' or equivalent non-numerical information relating to year of publication)
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! warning: [ref-year-value-2] Ref with id c116 has a year element which does not contain a digit. Is it correct? (it's acceptable for this element to contain 'no date' or equivalent non-numerical information relating to year of publication)
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! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c2) has a publication-type='other'. Is that correct?
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! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c96) has a publication-type='other'. Is that correct?
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! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c97) has a publication-type='other'. Is that correct?
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! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c98) has a publication-type='other'. Is that correct?
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! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c99) has a publication-type='other'. Is that correct?
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! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c100) has a publication-type='other'. Is that correct?
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! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c101) has a publication-type='other'. Is that correct?
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! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c102) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-person-group-flag-2] mixed-citation in reference (id=c102) does not have an author person-group. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c103) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c110) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c111) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c114) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c116) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-person-group-flag-2] mixed-citation in reference (id=c116) does not have an author person-group. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c118) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c120) has a publication-type='other'. Is that correct?
+ info: [article-version-flag] This is preprint version 1.2.
+ info: [permissions-info] This article is licensed under a CC BY 4.0 license. http://creativecommons.org/licenses/by/4.0/ https://elifeproduction.slab.com/posts/licensing-and-copyright-rqdavyty#permissions-info