MSID: 97438 Version: 3 DOI: 10.1101/2024.03.21.586113

fred-atherden commented 3 weeks ago

MSID: 97438

Version: 3

Preprint DOI: https://doi.org/10.1101/2024.03.21.586113

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=97438
New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
Reviews on sciety: https://sciety.org/articles/activity/10.1101/2024.03.21.586113

For trouble shooting (e.g. no Docmaps available):

DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

QC preview: https://prod--epp.elifesciences.org/previews/97438v3
Update ticket with any problems (add blocked label)
When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
Move card to next column
(At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

Preprint DOI : https://doi.org/10.1101/2024.03.21.586113
Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/97438/v3/reviews
To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

[ ] Kettle is on!

elife-bot commented 1 week ago

- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/00cvxb145; https://ror.org/03b48gv34; https://ror.org/00y4zzh67 in 2 https://ror.org/00cvxb145 https://ror.org/03b48gv34 https://ror.org/00y4zzh67 Department of Biochemistry and Department of Medicine, University of Washington, Seattle, WA
- error: [aff-institution-wrap-test-3] institution-wrap cannot contain text. It can only contain elements.
! warning: [aff-no-country] Affiliation does not contain a country element: 1 https://ror.org/007ps6h72 Translational Science and Therapeutics Division, Human Biology Division, Fred Hutchinson Cancer Center, Seattle, WA
! warning: [aff-no-country] Affiliation does not contain a country element: 2 https://ror.org/00cvxb145 https://ror.org/03b48gv34 https://ror.org/00y4zzh67 Department of Biochemistry and Department of Medicine, University of Washington, Seattle, WA
! warning: [journal-ref-text-content] This journal reference (id c43) has untagged textual content - , Costa A. . Is it tagged correctly?
+ info: [article-version-flag] This is preprint version 1.3.
+ info: [permissions-info] This article is licensed under a CC BY 4.0 license. https://creativecommons.org/licenses/by/4.0/ https://elifeproduction.slab.com/posts/licensing-and-copyright-rqdavyty#permissions-info
! warning: [ed-report-bold-terms-3] There is more than one of the same strength keywords in the assessment - convincing. This is very likely to be incorrect.

fred-atherden commented 1 week ago

Hi @acollings, slightly clunky wording in the Assessment. Do you want to tweak it, or happy to proceed?

Convincing evidence shows that Sir2 does not affect origin licensing but rather affects local transcription and nucleosome positioning which correlates with increased origin firing. Overall, the evidence is convincing and the model plausible.

acollings commented 1 week ago

Thanks @fred-atherden I've edited this

elifesciences / publish-reviewed-preprints-issues