MSID: 100011 Version: 2 DOI: 10.1101/2024.05.13.593697

[fred-atherden]

MSID: 100011

Version: 2

Preprint DOI: https://doi.org/10.1101/2024.05.13.593697

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

• DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=100011
• New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
• Reviews on sciety: https://sciety.org/articles/activity/10.1101/2024.05.13.593697

For trouble shooting (e.g. no Docmaps available):

• DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
• Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
• Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
• Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

• QC preview: https://prod--epp.elifesciences.org/previews/100011v2
• Update ticket with any problems (add blocked label)
• When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
• Move card to next column
• (At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

• Preprint DOI : https://doi.org/10.1101/2024.05.13.593697
• Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/100011/v2/reviews
• To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

• Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

• PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

• [ ] Kettle is on!

[elife-bot]

- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/01rdg4502; https://ror.org/05t99sp05; https://ror.org/05rrcem69 in 1 https://ror.org/01rdg4502 https://ror.org/05t99sp05 https://ror.org/05rrcem69 Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, Berkeley, CA 94720 USA
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/00hj54h04; https://ror.org/049emcs32; https://ror.org/019kgqr73 in 2 https://ror.org/00hj54h04 https://ror.org/049emcs32 https://ror.org/019kgqr73 Department of Integrative Biology and Biodiversity Collections, University of Texas at Austin, Austin, TX 78712 USA
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/05n911h24; https://ror.org/042aqky30; https://ror.org/01weqhp73 in 5 https://ror.org/05n911h24 https://ror.org/042aqky30 https://ror.org/01weqhp73 Ecological Networks Lab, Technische Universität Darmstadt, Darmstadt, Germany
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/00f54p054; https://ror.org/00zbnzw74; https://ror.org/00tdyb139 in 7 https://ror.org/00f54p054 https://ror.org/00zbnzw74 https://ror.org/00tdyb139 Department of Biology, Stanford University, Palo Alto, CA, 94305, USA
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/0534re684; https://ror.org/02a33b393; https://ror.org/022jc0g24 in 8 https://ror.org/0534re684 https://ror.org/02a33b393 https://ror.org/022jc0g24 Max Planck Institute for Evolutionary Biology, Plön, Germany 24306
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/00f8man71; https://ror.org/02eak8n78; https://ror.org/00nds2e18 in 9 https://ror.org/00f8man71 https://ror.org/02eak8n78 https://ror.org/00nds2e18 Department of Chemistry and Physics, Indiana State University, Terre Haute, IN 47809, USA
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/02qztda51; https://ror.org/053wdma52 in 10 https://ror.org/02qztda51 https://ror.org/053wdma52 Museo de Zoología, Escuela de Biología, Facultad de Ciencias Exactas y Naturales, Pontificia Universidad Católica del Ecuador, Quito, Ecuador
- error: [aff-institution-wrap-test-3] institution-wrap cannot contain text. It can only contain elements.
- error: [aff-institution-wrap-test-3] institution-wrap cannot contain text. It can only contain elements.
- error: [aff-institution-wrap-test-3] institution-wrap cannot contain text. It can only contain elements.
- error: [abstract-test-1] There should only be one abstract without an abstract-type (for the common-garden abstract). This asbtract does not have an abstract-type, but there is also a preceding abstract without an abstract-type. One of these needs to be given an abstract-type with the allowed values ('structured' for a syrctured abstract with sections; 'plain-language-summary' for a digest or author provided plain summary; 'teaser' for an impact statement; 'summary' for a general summary that's in addition to the common-garden abstract; 'graphical' for a graphical abstract).
! warning: [aff-no-wrap] Affiliation doesn't have an institution-wrap element (the container for institution name and id). Is that correct?
! warning: [aff-no-country] Affiliation does not contain a country element: Seoul National University
! warning: [aff-no-country] Affiliation does not contain a country element: Seoul National University
! warning: [ref-person-group-type-other] This person-group inside a other reference has the person-group-type 'editor'. Is that correct?
! warning: [mixed-citation-person-group-flag-2] mixed-citation in reference (id=c9) does not have an author person-group. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c27) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c32) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c53) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c57) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c59) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c60) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c62) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c67) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c73) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c85) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c93) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c101) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c109) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c130) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c133) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c134) has a publication-type='other'. Is that correct?
! warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c135) has a publication-type='other'. Is that correct?
+ info: [article-version-flag] This is preprint version 1.3.
+ info: [permissions-info] This article is licensed under a CC BY 4.0 license. https://creativecommons.org/licenses/by/4.0/ https://elifeproduction.slab.com/posts/licensing-and-copyright-rqdavyty#permissions-info