MSID: 97543 Version: 3 DOI: 10.21203/rs.3.rs-3329601/v3

fred-atherden commented 1 week ago

MSID: 97543

Version: 3

Preprint DOI: https://doi.org/10.21203/rs.3.rs-3329601/v3

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=97543
New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
Reviews on sciety: https://sciety.org/articles/activity/10.21203/rs.3.rs-3329601/v3

For trouble shooting (e.g. no Docmaps available):

DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

QC preview: https://prod--epp.elifesciences.org/previews/97543v3
Update ticket with any problems (add blocked label)
When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
Move card to next column
(At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

Preprint DOI : https://doi.org/10.21203/rs.3.rs-3329601/v3
Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/97543/v3/reviews
To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

[ ] Kettle is on!

fred-atherden commented 5 days ago

@gnott, any idea why the workflow hasn't run for this one?

gnott commented 5 days ago

Hi @fred-atherden, the workflow failed at the ExpandMeca step. Looking in the log file,

ExpandMeca Exception when expanding MECA file 97543-v3-meca.zip: An error occurred (404) when calling the HeadObject operation: Not Found

I think the object is not in the bucket when I am double-checking right now. When the zip is there, please you can ping me again and I'll start a new workflow.

fred-atherden commented 4 days ago

Ah 🤦 that's obviously it - thanks Graham.

@JGilbert-eLife, can we expedite this the package for one?

JGilbert-eLife commented 4 days ago

I've asked Exeter to expedite this. It was originally slated for delivery on 5 December.

fred-atherden commented 4 days ago

Many thanks!

JGilbert-eLife commented 21 hours ago

@gnott I've loaded the package for 97543 v3 to http://prod-elife-epp-meca.s3.amazonaws.com/97543-v3-meca.zip. Please could you trigger the bot to process this? Thanks!

elife-bot commented 15 hours ago

elife-bot workflow message:

ValidateJatsDtd, validation error for version DOI 10.7554/eLife.97543.3 file tmp/2024-11-25.16.21.58.Publish.IngestMeca_97543.ValidateJatsDtd/input_dir/3329601/3329601.xml: [{'line': '214', 'column': '16', 'message': "The content of element type 'article-meta' must match '(article-id,(article-version|article-version-alternatives)?,article-categories?,title-group?,(contrib-group|aff|aff-alternatives|x),author-notes?,(pub-date|pub-date-not-available?),volume,volume-id,volume-series?,issue,issue-id,issue-title,issue-title-group,issue-sponsor,issue-part?,volume-issue-group,isbn,supplement?,(((fpage,lpage?)?,page-range?)|elocation-id)?,(email|ext-link|uri|product|supplementary-material),history?,pub-history?,permissions?,self-uri,(related-article|related-object),abstract,trans-abstract,kwd-group,funding-group,support-group,conference*,counts?,custom-meta-group?)'."}, {'line': '1353', 'column': '11', 'message': "An element with the identifier 'A1' must appear in the document."}]

elife-bot commented 15 hours ago

+ info: [article-version-flag] This is preprint version 1.3.
+ info: [permissions-info] This article is licensed under a CC BY 4.0 license. https://creativecommons.org/licenses/by/4.0/ https://elifeproduction.slab.com/posts/licensing-and-copyright-rqdavyty#permissions-info

gnott commented 15 hours ago

Thanks @JGilbert-eLife for the note, I've started a workflow ...

JGilbert-eLife commented 15 hours ago

Thanks! I will check this tomorrow.

elifesciences / publish-reviewed-preprints-issues