MSID: 99833 Version: 2 DOI: 10.1101/2024.06.14.598983

[fred-atherden]

MSID: 99833

Version: 2

Preprint DOI: https://doi.org/10.1101/2024.06.14.598983

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

• DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=99833
• New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
• Reviews on sciety: https://sciety.org/articles/activity/10.1101/2024.06.14.598983

For trouble shooting (e.g. no Docmaps available):

• DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
• Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
• Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
• Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

• QC preview: https://prod--epp.elifesciences.org/previews/99833v2
• Update ticket with any problems (add blocked label)
• When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
• Move card to next column
• (At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

• Preprint DOI : https://doi.org/10.1101/2024.06.14.598983
• Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/99833/v2/reviews
• To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

• Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

• PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

• [ ] Kettle is on!

[elife-bot]

- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/01fpnj063; https://ror.org/04fxknd68 in 1 https://ror.org/01fpnj063 https://ror.org/04fxknd68 Department of Medical Informatics, College of Medicine, The Catholic University of Korea, Seoul 06591, Republic of Korea
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/01wjejq96; https://ror.org/00tdyb139 in 3 https://ror.org/01wjejq96 https://ror.org/00tdyb139 Department of Systems Biology, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Republic of Korea
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/04h9pn542; https://ror.org/01z4nnt86; https://ror.org/05yb43k62 in 4 https://ror.org/04h9pn542 https://ror.org/01z4nnt86 https://ror.org/05yb43k62 Department of Microbiology and Immunology, Seoul National University College of Medicine, Seoul 03080, Republic of Korea
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/04h9pn542; https://ror.org/01z4nnt86; https://ror.org/05yb43k62 in 5 https://ror.org/04h9pn542 https://ror.org/01z4nnt86 https://ror.org/05yb43k62 Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul 03080, Republic of Korea
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/04h9pn542; https://ror.org/01z4nnt86; https://ror.org/022j0mn33 in 6 https://ror.org/04h9pn542 https://ror.org/01z4nnt86 https://ror.org/022j0mn33 School of Chemical and Biological Engineering, Seoul National University, Seoul 08826, Republic of Korea
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/01fpnj063; https://ror.org/04fxknd68 in 7 https://ror.org/01fpnj063 https://ror.org/04fxknd68 Department of Medical Life Sciences, College of Medicine, The Catholic University of Korea, Seoul 06591, Republic of Korea
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/01fpnj063; https://ror.org/04fxknd68 in 9 https://ror.org/01fpnj063 https://ror.org/04fxknd68 Precision Medicine Research Center, College of Medicine, The Catholic University of Korea, Seoul 06591, Republic of Korea
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/01fpnj063; https://ror.org/04fxknd68 in 10 https://ror.org/01fpnj063 https://ror.org/04fxknd68 Cancer Evolution Research Center, College of Medicine, The Catholic University of Korea, Seoul 06591, Republic of Korea
- error: [aff-multiple-ids] Affiliation contains more than one institution-id element: https://ror.org/01fpnj063; https://ror.org/00y0zf565 in 11 https://ror.org/01fpnj063 https://ror.org/00y0zf565 CMC Institute for Basic Medical Science, the Catholic Medical Center of The Catholic University of Korea, Seoul 06591, Republic of Korea
- error: [aff-institution-wrap-test-3] institution-wrap cannot contain text. It can only contain elements.
- error: [aff-institution-wrap-test-3] institution-wrap cannot contain text. It can only contain elements.
- error: [aff-institution-wrap-test-3] institution-wrap cannot contain text. It can only contain elements.
- error: [junk-character-presence-3] p element contains a junk character '□' which should be replaced or deleted.
- error: [ar-bold-image] The bold text in a label preceding an image in the author response must be in the format 'Author response image 1.' or 'Author response table 1.' - this one is not - Author response table 1
- error: [sub-article-title-check-2] The title of a referee-report type sub-article should be in one of the following formats: 'Reviewer #0 (public review)' or 'Joint public review'. This one is: Reviewer #1 Public Reviews:
! warning: [surname-test-10] surname contains space(s) - 'Wei Tian Ng'. Has it been captured correctly? Should any namee be moved to given-names?
! warning: [surname-test-10] surname contains space(s) - 'Wei Tian Ng'. Has it been captured correctly? Should any namee be moved to given-names?
! warning: [aff-no-country] Affiliation does not contain a country element: 1 https://ror.org/01fpnj063 https://ror.org/04fxknd68 Department of Medical Informatics, College of Medicine, The Catholic University of Korea, Seoul 06591, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: 2 https://ror.org/05apxxy63 Graduate School of Medical Science and Engineering, Korea Advanced Institute and Technology (KAIST), Daejeon 34141, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: 3 https://ror.org/01wjejq96 https://ror.org/00tdyb139 Department of Systems Biology, College of Life Science and Biotechnology, Yonsei University, Seoul 03722, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: 4 https://ror.org/04h9pn542 https://ror.org/01z4nnt86 https://ror.org/05yb43k62 Department of Microbiology and Immunology, Seoul National University College of Medicine, Seoul 03080, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: 5 https://ror.org/04h9pn542 https://ror.org/01z4nnt86 https://ror.org/05yb43k62 Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul 03080, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: 6 https://ror.org/04h9pn542 https://ror.org/01z4nnt86 https://ror.org/022j0mn33 School of Chemical and Biological Engineering, Seoul National University, Seoul 08826, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: 7 https://ror.org/01fpnj063 https://ror.org/04fxknd68 Department of Medical Life Sciences, College of Medicine, The Catholic University of Korea, Seoul 06591, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: 8 https://ror.org/00cb3km46 Seoul National University Bundang Hospital, Seongnam, Gyeonggi-do 13620, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: 9 https://ror.org/01fpnj063 https://ror.org/04fxknd68 Precision Medicine Research Center, College of Medicine, The Catholic University of Korea, Seoul 06591, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: 10 https://ror.org/01fpnj063 https://ror.org/04fxknd68 Cancer Evolution Research Center, College of Medicine, The Catholic University of Korea, Seoul 06591, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: 11 https://ror.org/01fpnj063 https://ror.org/00y0zf565 CMC Institute for Basic Medical Science, the Catholic Medical Center of The Catholic University of Korea, Seoul 06591, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: 12 https://ror.org/053tcf519 INNOONE, Seoul 06654, Republic of Korea
! warning: [aff-no-country] Affiliation does not contain a country element: Seoul National University
+ info: [article-version-flag] This is preprint version 1.2.
+ info: [permissions-info] This article is licensed under a CC BY 4.0 license. https://creativecommons.org/licenses/by/4.0/ https://elifeproduction.slab.com/posts/licensing-and-copyright-rqdavyty#permissions-info
! warning: [url-conformance-test] @xlink:href doesn't look like a URL - 'https://ai–ve.org'. Is this correct?

[fred-atherden]

Have fixed this title in Kotahi - need to wait for the change to effectuate.

[fred-atherden]

Hi @acollings, the BRE for this one doesn't have an affiliation. Please could you add it in eJP?

[acollings]

Thanks @fred-atherden -- should be sorted

[fred-atherden]

Thanks!