MSID: 99955 Version: 1 DOI: 10.1101/2023.07.05.547807

fred-atherden commented 1 month ago

MSID: 99955

Version: 1

Preprint DOI: https://doi.org/10.1101/2023.07.05.547807

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=99955
New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
Reviews on sciety: https://sciety.org/articles/activity/10.1101/2023.07.05.547807

For trouble shooting (e.g. no Docmaps available):

DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

QC preview: https://prod--epp.elifesciences.org/previews/99955v1
Update ticket with any problems (add blocked label)
When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
Move card to next column
(At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

Preprint DOI : https://doi.org/10.1101/2023.07.05.547807
Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/99955/v1/reviews
To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

[ ] Kettle is on!

fred-atherden commented 3 weeks ago

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warn: [ref-year-value-2] Ref with id c89 has a year element which does not contain a digit. Is it correct? (it's acceptable for this element to contain 'no date' or equivalent non-numerical information relating to year of publication)
warn: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c89) has a publication-type='other'. Is that correct?

ameenanaji commented 3 weeks ago

Hi, we have just received an email from the authors asking if they can have until the 31st of August to provide a provisional author response. Can this be put on hold until then?

fred-atherden commented 3 weeks ago

Yep, sure - thanks Ameena!

fred-atherden commented 1 week ago

Hi @ameenanaji, have the authors been in touch about the author response for this one yet?

KJT08 commented 1 week ago

Hi @fred-atherden Just to let you know the author response has been added

elife-bot commented 1 week ago

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warning: [journal-ref-text-content] This journal reference (id c55) has untagged textual content - . Epub 2000/01/12. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c56) has untagged textual content - . Epub 2002/09/10. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c57) has untagged textual content - ). Epub 2018/08/09. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c58) has untagged textual content - . Epub 2005/10/04. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c59) has untagged textual content - . Epub 1987/04/01. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c60) has untagged textual content - . Epub 1952/03/29. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c61) has untagged textual content - . Epub 2019/09/29. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c62) has untagged textual content - . Epub 1988/05/01. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c64) has untagged textual content - . Epub 1994/05/06. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c65) has untagged textual content - . Epub 1999/09/02. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c67) has untagged textual content - . Epub 2001/08/03. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c68) has untagged textual content - . Epub 1998/07/23. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c71) has untagged textual content - . Epub 2016/06/11. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c72) has untagged textual content - . Epub 2012/09/11. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c73) has untagged textual content - . Epub 2022/01/05. doi: ; for a fee to commercial users). The revenue from these commercial sales is divided between the program developers and the Technical University of Denmark.. Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c74) has untagged textual content - ). Epub 2011/12/01. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c75) has untagged textual content - ). Epub 2017/10/23. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c76) has untagged textual content - . Epub 2021/04/23. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c77) has untagged textual content - ). Epub 2021/05/29. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c78) has untagged textual content - . Epub 20231013. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c79) has untagged textual content - -8. Epub 2020/06/13. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c80) has untagged textual content - Epub 2022/03/17. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c81) has untagged textual content - ). Epub 2022/04/09. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c82) has untagged textual content - . Epub 2019/05/31. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c83) has untagged textual content - . Epub 2008/05/23. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c84) has untagged textual content - . Epub 1996/12/15. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c85) has untagged textual content - . Epub 1996/03/01. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c86) has untagged textual content - . Epub 2015/11/26. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c87) has untagged textual content - . Epub 2018/07/20. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c88) has untagged textual content - . Epub 2010/12/28. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c90) has untagged textual content - . Epub 2022/06/16. doi: ; competing interests. D.S. is an employee of Genentech, a member of the Roche Group, and a shareholder in Roche.. Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c91) has untagged textual content - . Epub 2016/07/30. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c92) has untagged textual content - . Epub 2017/04/19. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c93) has untagged textual content - . Epub 2016/06/04. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c94) has untagged textual content - . Epub 2009/12/17. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c95) has untagged textual content - . Epub 2013/01/08. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c96) has untagged textual content - . Epub 2006/03/25. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c97) has untagged textual content - . Epub 2005/07/26. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c98) has untagged textual content - . Epub 2003/05/06. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c99) has untagged textual content - ). Epub 2021/03/11. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c100) has untagged textual content - . Epub 1988/05/25. PubMed PMID: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c101) has untagged textual content - . Epub 1998/03/28. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c102) has untagged textual content - . Epub 1999/11/26. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c103) has untagged textual content - . Epub 2009/05/13. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c104) has untagged textual content - . Epub 2020/12/15. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c105) has untagged textual content - . Epub 2021/04/14. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c106) has untagged textual content - :2006.0008. Epub 2006/06/02. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c107) has untagged textual content - ;Chapter 1:1.17.1-1..8. Epub 2008/02/12. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c109) has untagged textual content - . Epub 2000/06/01. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c110) has untagged textual content - . Epub 2018/05/17. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c111) has untagged textual content - . Epub 1959/08/01. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c112) has untagged textual content - ). Epub 2022/05/24. doi: . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c113) has untagged textual content - . Epub 2014/03/20. doi: . Is it tagged correctly?
warning: [ref-year-value-2] Ref with id c89 has a year element which does not contain a digit. Is it correct? (it's acceptable for this element to contain 'no date' or equivalent non-numerical information relating to year of publication)
warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c89) has a publication-type='other'. Is that correct?
info: [article-version-flag] This is preprint version 1.2.

elifesciences / publish-reviewed-preprints-issues