MSID: 101173 Version: 1 DOI: 10.1101/2024.07.10.602846

fred-atherden commented 3 months ago

MSID: 101173

Version: 1

Preprint DOI: https://doi.org/10.1101/2024.07.10.602846

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=101173
New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
Reviews on sciety: https://sciety.org/articles/activity/10.1101/2024.07.10.602846

For trouble shooting (e.g. no Docmaps available):

DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

QC preview: https://prod--epp.elifesciences.org/previews/101173v1
Update ticket with any problems (add blocked label)
When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
Move card to next column
(At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

Preprint DOI : https://doi.org/10.1101/2024.07.10.602846
Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/101173/v1/reviews
To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

[ ] Kettle is on!

elife-bot commented 2 months ago

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warning: [journal-ref-text-content] This journal reference (id c1) has untagged textual content - . Retrieved from . Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c13) has untagged textual content - , (February), 1–16. . Is it tagged correctly?
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warning: [journal-ref-text-content] This journal reference (id c24) has untagged textual content - , M. (. Is it tagged correctly?
warning: [journal-ref-text-content] This journal reference (id c36) has untagged textual content - (3), 427-441.e21. . Is it tagged correctly?
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warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c71) has a publication-type='other'. Is that correct?
warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c73) has a publication-type='other'. Is that correct?
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'EXPERIMENTAL MICE'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'WESTERN BLOTTING'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'IMMUNOFLUORESCENCE OF HIPPOCAMPAL TISSUES'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'SEQUENCING'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'READ MAPPING'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'GENE ONTOLOGY/PATHWAY ANALYSIS'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'RANK RANK HYPERGEOMETRIC OVERLAP (RRHO) ANALYSIS FOR CORRELATION OF GENE EXPRESSION PATTERNS'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'HIPPOCAMPAL SPATIAL EXPRESSION ANALYSIS'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'RNASCOPE ANALYSIS'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'PRIMARY HIPPOCAMPAL NEURON CULTURES AND IMMUNOSTAINING'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'CONFOCAL IMAGING AND QUANTIFICATION'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'STASTICAL ANALYSIS'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'HIPPOCAMPAL SPATIAL EXPRESSION ANALYSIS'
warning: [title-upper-case] Content of <title> element is entirely in upper case: Is that correct? 'STMN2/STMN4 ANTIBODY SPECIFICITY'
info: [article-version-flag] This is preprint version 1.1.

rkcook312 commented 2 months ago

https://sciety.org/evaluations/hypothesis:mDOJvG56Ee-7iN_8aT31qQ/content

elifesciences / publish-reviewed-preprints-issues