MSID: 93232 Version: 2 DOI: 10.1101/2023.10.11.561947

[fred-atherden]

MSID: 93232

Version: 2

Preprint DOI: https://doi.org/10.1101/2023.10.11.561947

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

• DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=93232
• New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
• Reviews on sciety: https://sciety.org/articles/activity/10.1101/2023.10.11.561947

For trouble shooting (e.g. no Docmaps available):

• DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
• Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
• Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
• Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

• QC preview: https://prod--epp.elifesciences.org/previews/93232v2
• Update ticket with any problems (add blocked label)
• When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
• Move card to next column
• (At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

• Preprint DOI : https://doi.org/10.1101/2023.10.11.561947
• Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/93232/v2/reviews
• To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

• Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

• PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

• [ ] Kettle is on!

[elife-bot]

warning: [mixed-citation-other-publication-flag] mixed-citation in reference (id=c30) has a publication-type='other'. Is that correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 2. Release of a chloroplast bud as visualized by RBCS-mRFP'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 3. Tracking of the stroma marker and chlorophyll fluorescence during the release of a chloroplast bud.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 4. A released chloroplast bud contains the outer envelope marker TOC64-mRFP.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 5. A released chloroplast bud contains the inner envelope marker KEA1-mRFP.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 6. A released chloroplast bud does not contain the thylakoid membrane marker ATPC1-tagRFP.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 7. Tracking of a Rubisco-containing body marked by CT-GFP.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 8. Tracking of a Rubisco-containing body marked by RBCS-tagRFP.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 9. Tracking of a Rubisco-containing body marked by RBCS-EYFP.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 10. Incorporation of a Rubisco-containing body into the vacuolar lumen.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 11. Video 2 of the vacuolar incorporation of a Rubisco-containing body.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 12. Video 3 of the vacuolar incorporation of a Rubisco-containing body.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 13. Video 4 of the vacuolar incorporation of a Rubisco-containing body.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 14. Video 5 of the vacuolar incorporation of a Rubisco-containing body.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 15. Budding of the isolation membrane–associated site within a chloroplast.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 17. Another time-lapse assay showing the concomitant progression of autophagosome development and chloroplast segmentation.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 18. Autophagy-related chloroplast segmentation occurs in sequence.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 19. Release of a chloroplast bud in a sugar-starved leaf of the drp5b mutant.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Video 20. An enlarged chloroplast caused by the drp5b mutation forms RCBs along the isolation membrane−associated sites.'. Is this correct?
info: [article-version-flag] This is preprint version 1.2.