MSID: 88024 Version: 4 DOI: 10.1101/2023.05.25.542290

[fred-atherden]

MSID: 88024

Version: 4

Preprint DOI: https://doi.org/10.1101/2023.05.25.542290

Step 1. Awaiting reviews

Editorial to post reviews via hypothesis

Useful links:

• DocMap: https://data-hub-api.elifesciences.org/enhanced-preprints/docmaps/v2/by-publisher/elife/get-by-manuscript-id?manuscript_id=88024
• New model tracking: https://docs.google.com/spreadsheets/d/1_fHaoOy7hjyocptKtVJRijeNpUY4hBS7Ck_aVmx6ZJk/
• Reviews on sciety: https://sciety.org/articles/activity/10.1101/2023.05.25.542290

For trouble shooting (e.g. no Docmaps available):

• DocMap issue addressing: https://miro.com/app/board/uXjVNCwK6EI=/
• Explore DataHub DocMaps API: https://lookerstudio.google.com/reporting/4c2f0368-babb-4beb-b5b3-497e7e7b0f08/page/ejphD
• Unmatched submissions and preprints: https://lookerstudio.google.com/u/0/reporting/9f86204f-3bf7-477c-9b18-5c5ef141bf69/page/p_gxi57ha93c
• Unmatched manuscripts spreadsheet: https://docs.google.com/spreadsheets/d/15QcK8w-ssB7109RQEDtFpJPZ0J5HTGxoHa_2TtpMBbg/edit#gid=1336081641

Step 2. Preview reviewed preprint

Production QC content ahead of publication

Instructions:

• QC preview: https://prod--epp.elifesciences.org/previews/88024v4
• Update ticket with any problems (add blocked label)
• When QC OK, add QC OK label to ticket and add publication date and time to https://docs.google.com/spreadsheets/d/1amAlKvdLcaDp5W8Z8g77NmkwbMF5n_u89ArSqPMO8jg
• Move card to next column
• (At end of the day post link in #enhanced-preprint and ask for PDF to be generated)

Useful links:

• Preprint DOI : https://doi.org/10.1101/2023.05.25.542290
• Confirm reviews returned by EPP: https://prod--epp.elifesciences.org/api/reviewed-preprints/88024/v4/reviews
• To update the MECA path in the docmap: https://docs.google.com/spreadsheets/d/1mctCQuNFBjSn97Lihy7_vBO6z7-N-oqyLv4clyi6zHg

Step 3: Awaiting search reindex

This step adds the reviewed preprint to the homepage: https://elifesciences.org

The search reindex is triggered once an hour. We need the reviewed preprint to be indexed as the search application serves the journal homepage.

Useful links:

• Jenkins pipeline to reindex search can be triggered sooner or monitored here: https://alfred.elifesciences.org/job/process/job/process-reindex-reviewed-preprints/

Step 4: Published! PDF requested

Waiting for PDF to be generated

Useful links:

• PDF tracking: https://docs.google.com/spreadsheets/d/106_XeDjmuBae7gexOTNzg60lapeqjl2aRn9DzupGyS8/

Step 5: Introduce PDF to data folder and git repo

Upload PDF to relevent folder in git repo https://github.com/elifesciences/enhanced-preprints-data/

Step 6: Done!

• [ ] Kettle is on!

[elife-bot]

error: [journal-ref-article-title] This journal reference (id c7) has no article-title element.
error: [fig-graphic-conformance] Fig 1. does not have a child graphic element, which must be incorrect.
warning: [p-all-bold] Content of p element is entirely in bold - 'Fig S1. ARID1A transcripts detected in pachytene spermatocytes.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Fig S3. Spermatogenesis appears unperturbed in Arid1acKO males.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Fig S4. Arid1acKO testes display inefficient Stra8-Cre activity.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Fig S5. Arid1a mutant testes exhibit aberrant meiotic prophase I, reducing the abundance of round spermatids during the first wave of spermatogenesis.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Fig S6. Transcription start sites of differentially expressed autosomal and sex-linked genes display ARID1A occupancy.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Fig S7. ARID1A does not influence sex body formation.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Fig S8. ARID1A does not influence the expression or incorporation of H3.3.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Fig S9. ARID1A limits H3.3 occupancy at promoters'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Fig S10. Genome browser views of ARID1A governed H3.3 genomic associations.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Fig S11. H3.3 occupancy is antagonistic to DMC1 associations in non-homologous sex-linked regions.'. Is this correct?
warning: [p-all-bold] Content of p element is entirely in bold - 'Fig S12. ARID1A does not affect the axial association of RAD51 with the XY during pachynema.'. Is this correct?
info: [article-version-flag] This is preprint version 1.4.

[naushinthomson]

fig 1 display issue