fix: validate run log schema

elixir-cloud-aai / proWES

Proxy service for injecting middleware into GA4GH WES requests

Apache License 2.0

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fix: validate run log schema #35

Open uniqueg opened 2 years ago

uniqueg commented 2 years ago

cwl-WES currently does not issue spec-compliant run logs (elixir-cloud-aai/cwl-WES/issues/128). Therefore, run log validation has currently been enabled. Once cwl-WES supports spec-compliant run logs, change the following relative to commit f4d7082ca36607ffc02f10d74dd00bf4c900bc17:

[ ] pro_wes/client_wes.py:L218-228
[ ] pro_wes/config.yaml:L65-66
[ ] pro_wes/tasks/track_run_progress.py:L19&L93-95&L99-101&L141-143&L147-149

uniqueg commented 1 year ago

Better to fix this via a cwl-WES compatibility middleware rather than propagating another WES implementations' bad habits.

Depends on #72.