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elixir-europe / plant-brapi-to-isa

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observationLevels and observationUnitXref implementation #15

Closed bedroesb closed 5 years ago

bedroesb commented 5 years ago

example of data file d_RIGW1_BLOCK>PLOT.txt from INRA:

observationLevels[BLOCK>PLOT] observationLevels[BLOCK] observationUnitDbId observationUnitXref germplasmDbId germplasmName X Y accessionNumber observationTimeStamp HS_Tmax_B10_BudFlo HS_Tmax_B06_FloVer FLO_50 VER_50 BERRY_TOTNER BERRY_TOTGERAN BERRY_TOTLIN BERRY_TOTATERP DOY_FLO BERRY_TOTCITRO
26500 1 2990994-2006 gnpis.lot:'4094G' aHR0cHM6Ly9kb2kub3JnLzEwLjE1NDU0L0Y5MkpPVQ== Riesling*Gewurztraminer 4094G 31 4 41521Col4094G 11/08/2006
26500 1 2990994-2006 gnpis.lot:'4094G' aHR0cHM6Ly9kb2kub3JnLzEwLjE1NDU0L0Y5MkpPVQ== Riesling*Gewurztraminer 4094G 31 4 41521Col4094G
26637 2 2991071-2008 gnpis.lot:'0018E' aHR0cHM6Ly9kb2kub3JnLzEwLjE1NDU0L1QyTFFRUg== Riesling*Gewurztraminer0018E 26 16 41207Col0018E 13/06/2008
26637 2 2991071-2008 gnpis.lot:'0018E' aHR0cHM6Ly9kb2kub3JnLzEwLjE1NDU0L1QyTFFRUg== Riesling*Gewurztraminer0018E 26 16 41207Col0018E 15/08/2008
26637 2 2991071-2008 gnpis.lot:'0018E' aHR0cHM6Ly9kb2kub3JnLzEwLjE1NDU0L1QyTFFRUg== Riesling*Gewurztraminer0018E 26 16 41207Col0018E 165.123.425.925.929

example of data file d_VIB_study___27_plant.txt from PIPPA :

observationUnitDbId observationUnitXref germplasmDbId germplasmName X Y accessionNumber observationTimeStamp leafWidth leafLength shootDryWeight leafArea cellDivisionZoneLengthLeaf shootFreshWeight leafFreshWeight leafLaminaFreshWeight finalLeafLength
P_4376 Zea_VIB_RIL130RIL2way___1 RIL130 RIL 2-way RIL130 RIL 2-way 2011-10-05T07:00:00Z 120.00
P_4376 Zea_VIB_RIL130RIL2way___1 RIL130 RIL 2-way RIL130 RIL 2-way 2011-10-06T07:05:00Z 172.00
P_4376 Zea_VIB_RIL130RIL2way___1 RIL130 RIL 2-way RIL130 RIL 2-way 2011-10-07T07:15:00Z 219.00
P_4377 Zea_VIB_RIL130RIL2way___1 RIL130 RIL 2-way RIL130 RIL 2-way 2011-10-04T07:00:00Z 139.00
P_4377 Zea_VIB_RIL130RIL2way___1 RIL130 RIL 2-way RIL130 RIL 2-way 2011-10-05T07:00:00Z 190.00
bedroesb commented 5 years ago

Had some local branch problems ;) is fixed now

cpommier commented 5 years ago

Done, thanks