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elixir-europe / plant-brapi-to-isa

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Minor update #51

Closed bedroesb closed 5 years ago

bedroesb commented 5 years ago
bedroesb commented 5 years ago

@cpommier what do you think of the changes I made in the documentation?

Otherwise I think we can merge with the master

bedroesb commented 5 years ago

TDF example of the portuguese endnote:

Variable ID Variable Name Trait Method Method Description Reference Associated to the Method Scale
ESP Cork thickness before boiling, espessura (BrAPI variableDbId: 3) Cork plank thickness Cork thickness before boiling protocol Cork's thickness is measured in eight positions:... Pestana (2011) Silva Lus. vol9 no 1 + Ramos 2013 mm
Pore-Tr Pore size - Transversal section (BrAPI variableDbId: 4) Pores area Nail size - Transversal section protocol Defects are quantified in the two transversal of ... DOI 10.1007/s11295-013-0652-6 mm2
Pore-R Pore size - Radial section (BrAPI variableDbId: 5) Pores area Nail size - Radial section protocol Defects are quantified in the two radial surfaces... DOI 10.1007/s11295-013-0652-6 mm2
Pore-Ta Pore size -Tangential section (BrAPI variableDbId: 6) Pores area Nail size - Tangential section protocol Defects are quantified in the two tangential surf... DOI 10.1007/s11295-013-0652-6 mm2
%_Pore-Tr % Pore size - Transversal section (BrAPI variableDbId: 7) Cork Porosity Nail size - Transversal section protocol Defects are quantified in the two transversal of ... DOI 10.1007/s11295-013-0652-6 %

example of our end note:

Variable ID Variable Name Trait Trait Accession Number Method Method Description Scale
cellDivisionZoneLengthLeaf 188 cellDivisionZoneLengthLeaf TO:0000540 cellDivisionZoneLengthLeaf size of the cell division zone at the basis of a leaf mm
finalLeafLength 195 finalLeafLength TO:0000891 finalLeafLength length of a leaf at the end of its elongation mm
leafArea 60 leafArea TO:0000135 leafArea a leaf anatomy and morphology trait (TO:0000748) which is associated with the total area of a leaf (PO:0025034) mm2
leafFreshWeight 71 leafFreshWeight TO:0000370 leafFreshWeight a leaf weight trait (TO:0000505) which is associated with the measure of the wet weight of a leaf (PO:0025034) g
leafLaminaFreshWeight 186 leafLaminaFreshWeight TO:0000552 leafLaminaFreshWeight fresh weight of the leaf lamina (leaf without periole or sheat) g
leafLength 65 leafLength TO:0000571 leafLength actual measurements in centimeters of the leaf cm