elixir-europe / plant-brapi-to-isa

BSD 3-Clause "New" or "Revised" License

8 stars 6 forks source link

'nucleic acid sequencing' instead of 'Phenotyping' as protocol type #62

Closed bedroesb closed 3 years ago

bedroesb commented 5 years ago

Because Phenotyping is not a supported protocol in ISA-tools, we are forced to use nucleic acid sequencing as protocol_type to have an assay name column in the assay file. This is not following the MIAPPE standard, so it is needed to manually change this in the investigation file to Phenotyping.

https://github.com/ISA-tools/isa-api/issues/345

proccaserra commented 5 years ago

@bedroesb: This is trivial to fix in isa-api, i am about to push a change shortly. Note that we'll be using lower case phenotyping.