search

elixir-europe / plant-brapi-to-isa

BSD 3-Clause "New" or "Revised" License
8 stars 6 forks source link

Values of the first level ObservationUnit ID is not correctly registered #67

Closed cpommier closed 4 years ago

cpommier commented 4 years ago

Instead of the following:

observationLevels[BLOCK]    observationLevels[BLOCK>PLOT>PLANT] observationLevels[BLOCK>PLOT]   observationUnitName 
        BLOCK>PLOT  26515.13    gnpis.lot:'0009D'

we should have something like:

observationLevels[BLOCK]    observationLevels[BLOCK>PLOT>PLANT] observationLevels[BLOCK>PLOT]   observationUnitName 
1   45  26515.13    26515.13    gnpis.lot:'0009D'

with that parameters call: -e https://urgi.versailles.inra.fr/faidare/brapi/v1/ -J -V -s dXJuOlVSR0kvc3R1ZHkvUklHVzE=

bedroesb commented 4 years ago

hmm interesting, let me try to reconstruct this

bedroesb commented 4 years ago

@cpommier I got a fix with outcome:

observationLevels[BLOCK>PLOT] observationLevels[BLOCK>PLOT>PLANT] observationLevels[BLOCK] observationUnitName observationUnitXref X Y germplasmDbId
26515 26515.13 1 26515.13 gnpis.lot:'0009D' 22 13 aHR0cHM6Ly9kb2kub3JnLzEwLjE1NDU0L09EUE1KTg==
26515 26515.13 1 26515.13 gnpis.lot:'0009D' 22 13 aHR0cHM6Ly9kb2kub3JnLzEwLjE1NDU0L09EUE1KTg==
26515 26515.13 1 26515.13 gnpis.lot:'0009D' 22 13 aHR0cHM6Ly9kb2kub3JnLzEwLjE1NDU0L09EUE1KTg==
26515 26515.13 1 26515.13 gnpis.lot:'0009D' 22 13 aHR0cHM6Ly9kb2kub3JnLzEwLjE1NDU0L09EUE1KTg==
26515 26515.13 1 26515.13 gnpis.lot:'0009D' 22 13 aHR0cHM6Ly9kb2kub3JnLzEwLjE1NDU0L09EUE1KTg==

Was a stupid bug in the code, obslvl instead of obslvls :)