Closed elizabethmcd closed 5 years ago
I believe I fixed this is my genomes-MAGs-database repository to not be biased by specific datasets with my condor pipeline. Just not putting it on a TOL for presence/absence - unless pulling down a representative from each phyla, but would take a while for something to look pretty
I'm a little too far down the road to fix some of this stuff for my mehg analysis. And that one is a little tricky with all the different datasets I pulled from and trying to make comparative analyses with HGT and whatnot.
A good thing to try would be to wrap up that project and try the presence/absence among the whole tree of screened genomes (TOL) for tfdA since it seems to be a little more widespread and not as rare as the mehg crap.
Steps that would have to be taken into account: