elizabethmcd / metabolisHMM

Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
GNU General Public License v3.0
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Any Pathway > Visualization #17

Closed elizabethmcd closed 4 years ago

elizabethmcd commented 4 years ago

My custom-marker script is currently set to work with the WLJ proteins. It also doesn't order them in function until I get to the R script. Change this to take as input as well a list of the order of any set of markers (so that the user can get the figure in the order wanted), and visualize the heatmap.

Take a list Make heatmap R script takes into account numbering of within a group (such as phyla) and also outputs the number next to the phyla label. Make an option to turn that off if comparing across single genomes