Metabolic Summary heatmap

elizabethmcd / metabolisHMM

Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs

GNU General Public License v3.0

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Metabolic Summary heatmap #20

Closed elizabethmcd closed 4 years ago

elizabethmcd commented 4 years ago

Create a single function or separate functions to split large dataframe into cycles, so they are colored differently, and then stitch them back together in one single PDF
Make the axis labels and title a bit prettier
Above each heatmap that will be stitched together, put the title of the cycle, and then have a larger title for the merged "grid"

elizabethmcd commented 4 years ago

this all has to be done within the R functions

elizabethmcd commented 4 years ago

separate scripts probably for the custom and the curated markers, because the curated summary has to manually split things off, whereas custom is the same colors/grid

elizabethmcd commented 4 years ago

I mostly figured out how to make separate plots for each set of cycles in R and stitch them together, but it's insanely buggy and the widths are off. For installation ease and width of plots, probably need to figure out seaborn heatmaps and combine those since can figure out axes easier