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elizabethmcd / metabolisHMM

Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
GNU General Public License v3.0
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prodigal quiet #36

Closed elizabethmcd closed 4 years ago

elizabethmcd commented 4 years ago

will scream about short contigs and using the -m or -c for metagenomic "incomplete" genomes to have greater than 1000 nts or something of the like, either make STOUT null or put in quiet version

elizabethmcd commented 4 years ago

already in quiet mode, maybe leave this so the user knows if they have really short contigs