Closed elizabethmcd closed 4 years ago
Put external data file for TOL accessions on github, read file within metabolisHMM create-genome-phylogeny workflow using urllib2 package to read the file and pass to ncbi-genome-download (which I believe can be used within python as arguments/package as well as the CLI)
just make this a demo, add arguments for refs vs input and highlight on tree
Integrating putative genome classifications with the Hug 2016 et al. TOL of genomes, highlighting input genomes