Open elizabethmcd opened 2 years ago
Now remember why "all_list" was removed - this is not best practice, but this isn't reflected in the command-line options and documentation. Update code to remove "all" mention later downstream, and update documentation to give best practices of making separate archaea/bacteria trees and then concatenating afterwards if desired
In
create-genome-phylogeny
no list for "all". RAXML also errors with options