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elizabethng / predator-diets

Code used to perform the analyses in "Predator stomach contents can provide accurate indices of prey biomass"
https://academic.oup.com/icesjms/article/78/3/1146/6145864
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Write VAST inputs as functions #10

Closed elizabethng closed 5 years ago

elizabethng commented 5 years ago

See examples of how Christine does this (https://github.com/cstawitz/spatiotemporalBSAIgrowth) Could also see what Cole's workflow looks like

Data set up for species, season, maybe size??

elizabethng commented 5 years ago

Models to run: Diet data: 5 species x 2 seasons x covariates x 2 models (spatial and non-spatial) Trawl data: 6 species (5 preds + herring) x 2 seasons

elizabethng commented 5 years ago

Christine separates out the config files with details for each species: https://github.com/cstawitz/spatiotemporalBSAIgrowth/tree/master/Config_files

elizabethng commented 5 years ago

Implemented in https://github.com/elizabethng/predator-diets/pull/17#issue-329512395, but surely will require modification (especially to handle missing years in different data subsets)