elliohow / fMRI_ROI_Analysis_Tool

An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
Apache License 2.0
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[JOSS REVIEW] Documentation for “critical parameters” #42

Closed ZeitgeberH closed 1 year ago

ZeitgeberH commented 1 year ago

In the Parsing phase, default critical parameters are Multiband and SENSE. Are there any other parameters currently supported. If yes, could you put that in the documentation anywhere. If not, please add a few words about that in documentation. The tooltips actually contain very useful information. I suggest you copy these text (at least for the critical parameters part) into your documentation as well.

elliohow commented 1 year ago

Yes, any parameter is supported. I've updated the tutorial with the below text to reflect this:

The critical parameter settings are used to supply the names and file name abbreviations of the independent variables, therefore fRAT supports the use of any parameters (and any number of them).

If critical parameters is left blank, the ROI analysis will combine all datasets, regardless of the independent variable used for each file. This can be useful for calculating tSNR across the entire dataset, if the independent variable does not affect tSNR.

I've also updated the tooltip with version 1.3.5.