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ellisdg / 3DUnetCNN

Pytorch 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation
MIT License
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Question regarding BRATS 2017 dataset #119

Closed DonnieKim411 closed 6 years ago

DonnieKim411 commented 6 years ago

Hello,

Here is a quick question regarding to the dataset. So when I downloaded LGG and HGG data from your link, every patient has corresponding TCGA labels (e.g. TCGA-CS-4942).

But when I looked at BRATS 2018 dataset, it is not organized in that way (e.g. Brats18_TCIA09_141_1).

So the question I have is... did BRATS change the way naming their patient directories this year?

OR

for 2017, you got the same naming as 18 version (i.e. Brats17_TCIA09_141_1) but figured out their corresponding TCGA labels somehow and you manually annotated them...?

sbakas commented 6 years ago

The BraTS'18 naming convention changed this year. You might as well download the BraTS 2017 data if you want to evaluate specific cases. Just email brats2018@cbica.upenn.edu with that request.