Update spoligotyping module to use standard names for spoligotypes

ellisrichardj / BovTB-nf

Nextflow script for processing WGS data

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Closed ellisrichardj closed 5 years ago

ellisrichardj commented 5 years ago

The internationally recognized names for spoligotypes are available here: https://www.mbovis.org/

ellisrichardj commented 5 years ago

Not sure if this will be required now: spoligotype inference may not be required in future

ellisrichardj commented 5 years ago

The spoligotyping extraction process will be dropped to focus on efficient extraction of WGS cluster