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elsiklab / multibigwig

A JBrowse plugin for plotting multiple bigwig subtracks
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Color gradient #3

Closed carrere closed 8 years ago

carrere commented 8 years ago

Is there also any way to choose Colors for density display (instead of the red to blue gradient)?

cmdcolin commented 8 years ago

I think you can use pos_color and neg_color, as well as the bicolor_pivot value which is the value that is chosen to switch from "red to blue"

http://gmod.org/wiki/JBrowse_Configuration_Guide

I haven't tested that very much but I believe this works well for the MultiDensity track type

cmdcolin commented 8 years ago

It inherits from some of the default bigwig configs http://gmod.org/wiki/JBrowse_Configuration_Guide#Example_BigWig-based_Wiggle_Color_Density_Track_Configuration

carrere commented 8 years ago

Ok, I'll test tomorrow and send you feedback. Thanks again for this really usefull plugin!

Seb Le 25 mai 2016 20:37, "Colin Diesh" notifications@github.com a écrit :

It inherits from some of the default bigwig configs http://gmod.org/wiki/JBrowse_Configuration_Guide#Example_BigWig-based_Wiggle_Color_Density_Track_Configuration

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carrere commented 8 years ago

Thanks, it's working !

Le 25/05/2016 20:37, Colin Diesh a écrit :

I think you can use pos_color and neg_color, as well as the bicolor_pivot value which is the value that is chosen to switch from "red to blue"

http://gmod.org/wiki/JBrowse_Configuration_Guide

I haven't tested that very much but I believe this works well for the MultiDensity track type

— You are receiving this because you authored the thread. Reply to this email directly or view it on GitHub https://github.com/cmdcolin/multibigwig/issues/3#issuecomment-221666351

cmdcolin commented 8 years ago

Sweet :) Close for now