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elsiklab / multivariantviewer

A JBrowse plugin with a custom variant track for multi-VCF files and optionally plotting LD scores
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TypeError: e.store.getVCFHeader is not a function #25

Closed srobb1 closed 4 years ago

srobb1 commented 4 years ago

Hello,

I am getting an error when diplaying a MultiVariantViewer/View/Track/Grid . I am not sure when this started. I have not check these tracks for a while and I have done an upgrade or two since my last look. I am currently running JBrowse 1.16.6.

Screen Shot 2019-11-20 at 10 49 57 AM

0.bundle.js:14 TypeError: e.store.getVCFHeader is not a function
    at 1.bundle.js:1
    at u (0.bundle.js:1)
    at c.then.h.then (0.bundle.js:1)
    at Object.makeTrackLabel (1.bundle.js:1)
    at Object.setViewInfo (1.bundle.js:1)
    at Object.d (0.bundle.js:1)
    at Object.setViewInfo (1.bundle.js:1)
    at Object.<anonymous> (1.bundle.js:1)
    at 0.bundle.js:1
    at 1.bundle.js:1 "TypeError: e.store.getVCFHeader is not a function
    at https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:828650
    at u (https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:41141)
    at c.then.h.then (https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:42531)
    at Object.makeTrackLabel (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:828626)
    at Object.setViewInfo (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:263250)
    at Object.d (https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:13514)
    at Object.setViewInfo (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:320524)
    at Object.<anonymous> (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:514073)
    at https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:20377
    at https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:514577
    ----------------------------------------
    rejected at d (https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:41576)
    at u (https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:41291)
    at c.then.h.then (https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:42531)
    at Object.makeTrackLabel (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:828626)
    at Object.setViewInfo (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:263250)
    at Object.d (https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:13514)
    at Object.setViewInfo (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:320524)
    at Object.<anonymous> (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:514073)
    at https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:20377
    at https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:514577
    ----------------------------------------
Error
    at c.then.h.then (https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:42476)
    at Object.makeTrackLabel (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:828626)
    at Object.setViewInfo (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:263250)
    at Object.d (https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:13514)
    at Object.setViewInfo (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:320524)
    at Object.<anonymous> (https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:514073)
    at https://simrbase.stowers.org/jbrowse/dist/0.bundle.js:1:20377
    at https://simrbase.stowers.org/jbrowse/dist/1.bundle.js:1:514577
    at c (https://simrbase.stowers.org/jbrowse/dist/main.bundle.js:1:2962)
    at e (https://simrbase.stowers.org/jbrowse/dist/main.bundle.js:1:2140)"
r @ 0.bundle.js:14

Thank you, Sofia

cmdcolin commented 4 years ago

Hi there, I think if you pull the latest code from this repo you'll get a fix for this error

srobb1 commented 4 years ago

Will I need to rerun ./setup.sh ?

cmdcolin commented 4 years ago

Ya, the latest versions of jbrowse (all versions post 1.13.0) require rebuilding plugins. You can use ./setup.sh to do that after any plugin change

srobb1 commented 4 years ago

Thanks @cmdcolin! The error is gone!