Hi. I have encountered error exit status (126) when I run the command as the manual instructed
nextflow run setup.nf
The error output is presented below. Any idea how to fix this? Thank you.
N E X T F L O W ~ version 21.04.3
Launching setup.nf [furious_gautier] - revision: d470aac456
executor > local (10)
[aa/4fb403] process > downloadHumanGTF [ 50%] 1 of 2, failed: 1, retries: 1
[0f/c1a3db] process > downloadHumanFasta [ 50%] 1 of 2, failed: 1, retries: 1
[9f/8c56d4] process > downloadMouseGenome [ 50%] 1 of 2, failed: 1, retries: 1
[0f/3f1dea] process > downloadDBSNP [ 50%] 1 of 2, failed: 1, retries: 1
[- ] process > generateStarIndex -
[- ] process > generateStarIndexMouse -
[- ] process > indexFasta -
[- ] process > createDictionery -
[- ] process > createIntervals -
[- ] process > indexIntervals -
[f7/b3a6d1] process > indexCosmic (1) [ 50%] 1 of 2, failed: 1, retries: 1
[- ] process > renameDBSNP -
[- ] process > renameCosmic -
[- ] process > indexRenamedVCFs -
[2f/8ead5a] NOTE: Process downloadHumanFasta terminated with an error exit status (126) -- Execution is retried (1)
[bc/a59958] NOTE: Process downloadHumanGTF terminated with an error exit status (126) -- Execution is retried (1)
[82/a03e7b] NOTE: Process downloadDBSNP terminated with an error exit status (126) -- Execution is retried (1)
[be/cc82f8] NOTE: Process downloadMouseGenome terminated with an error exit status (126) -- Execution is retried (1)
[c9/fa1456] NOTE: Process indexCosmic (1) terminated with an error exit status (126) -- Execution is retried (1)
Error executing process > 'downloadHumanFasta'
executor > local (10)
[aa/4fb403] process > downloadHumanGTF [100%] 2 of 2, failed: 2, retries: 1 ✘
[0f/c1a3db] process > downloadHumanFasta [100%] 2 of 2, failed: 2, retries: 1 ✘
[9f/8c56d4] process > downloadMouseGenome [100%] 2 of 2, failed: 2, retries: 1 ✘
[0f/3f1dea] process > downloadDBSNP [100%] 2 of 2, failed: 2, retries: 1 ✘
[- ] process > generateStarIndex -
[- ] process > generateStarIndexMouse -
[- ] process > indexFasta -
[- ] process > createDictionery -
[- ] process > createIntervals -
[- ] process > indexIntervals -
[f7/b3a6d1] process > indexCosmic (1) [100%] 2 of 2, failed: 2, retries: 1 ✘
[- ] process > renameDBSNP -
[- ] process > renameCosmic -
[- ] process > indexRenamedVCFs -
[2f/8ead5a] NOTE: Process downloadHumanFasta terminated with an error exit status (126) -- Execution is retried (1)[bc/a59958] NOTE: Process downloadHumanGTF terminated with an error exit status (126) -- Execution is retried (1)[82/a03e7b] NOTE: Process downloadDBSNP terminated with an error exit status (126) -- Execution is retried (1)
[be/cc82f8] NOTE: Process downloadMouseGenome terminated with an error exit status (126) -- Execution is retried (1)
[c9/fa1456] NOTE: Process indexCosmic (1) terminated with an error exit status (126) -- Execution is retried (1)
Error executing process > 'downloadHumanFasta'
Caused by:
Process downloadHumanFasta terminated with an error exit status (126)
Hi. I have encountered error exit status (126) when I run the command as the manual instructed
nextflow run setup.nf
The error output is presented below. Any idea how to fix this? Thank you.