Closed samfux84 closed 8 years ago
It also requires the Python package memory_profiler:
[sfux@develop01 09032016]$ ./jitterbug.py -h
Traceback (most recent call last):
File "./jitterbug.py", line 21, in <module>
from Run_TE_ID_reseq import *
File "/cluster/apps/gdc/jitterbug/09032016/Run_TE_ID_reseq.py", line 18, in <module>
from memory_profiler import profile
ImportError: No module named memory_profiler
Thanks for noticing. Now it has been included.
Dear Jitterbug developer,
as dependencies for jitterbug, you mention pysam, pybedtools and psutil. I have installed all of these modules and then tried to run jitterbug, which resulted in an error message about pandas not being installed.
Please add also the pandas package in the list of dependencies.
Thank you very much and best regards
Samuel Fux