Error when I launch the script

elzbth / jitterbug

Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference.

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Error when I launch the script #12

Closed Leelouh closed 6 years ago

Leelouh commented 7 years ago

Hi,

I tried to launch the script jitterbug.py without arguments, just to see if the installation was ok. But I have this two error :

Traceback (most recent call last): File "./jitterbug.py", line 21, in from Run_TE_ID_reseq import * File "/home/lhelou/local/jitterbug/Run_TE_ID_reseq.py", line 6, in import pysam ImportError: No module named pysam

jitterbug needs to be launch with Python2 right?

Can you help me? Thank you!

mbosio85 commented 7 years ago

Hi,

yes, it requires to be with python2, it looks like you don't have pysam in you python librarires