elzbth / jitterbug

Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end reads with respect to an assembled reference.
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output files empty #18

Open Nisha-Hemandhar-Kumar opened 5 years ago

Nisha-Hemandhar-Kumar commented 5 years ago

Hi, After the filtering step 1.2 the output files sample.TE_insertions_paired_clusters.filtered.gff3 is empty. There's no error and the run was smooth. what seems to be the issue? Thanks