Closed aseltmann closed 2 weeks ago
The problem seems to be that your value of jupyter-org-mime-types
somehow doesn't contain :text/html
so the :display
header argument does nothing. The :display
header argument just filters the list of mime types in jupyter-org-mime-types
to be the ones specified by :display
. The filtering can't find an html
mime-type in jupyter-org-mime-types
since it doesn't exist and just falls back to looking for one of the other mime-types.
Re-adding :text/html
to jupyter-org-mime-types
should fix your issue. The question now is why was it removed from jupyter-org-mime-types
as that variable is not supposed to be altered under normal usage.
Thanks for pointing that out, I didn't see that haha. I found the culprit, it was in doom-emacs/modules/lang/org/contrib/jupyter.el
where my git-timemachine
revealed:
Henrik Lissner 2020-08-06 06:32 lang/org: improve jupyter support
(use-package! ob-jupyter
:defer t
:init
...
:config
...
;; Remove text/html since it's not human readable
(delq! :text/html jupyter-org-mime-types)
And I found this thread where it was discussed: https://github.com/doomemacs/doomemacs/pull/2477 and https://github.com/doomemacs/doomemacs/pull/2477#issuecomment-636311284 even pointed out that this seems a bit too opinionated, but seems like they left it in anyway... I am thinking about opening a pull request where this line is removed.
To mitigate this issue:, I tried to add the following to my literal config:
#+BEGIN_SRC emacs-lisp
(setq jupyter-org-mime-types '(:text/org :image/svg+xml :image/jpeg
:image/png :text/html :text/markdown
:text/latex :text/plain))
#+END_SRC
I am not that fluent in lisp and don't do own elisp scripting. If I execute it by hand, this does set the jupyter-org-mime-types
variable correctly, but it does not work when I put it in my literal config and startup emacs after doom sync
. Do you have an idea on how to do this correctly?
I'm not sure what could be the problem with your setup, couldn't you just re-add :text/html
after the configuration that removes it loads, e.g. after the config. in that use-package
expression loads?
I'm closing this, as hlissner fixed this issue in doom upstream after I suggested the change on the doom discord.
I switched from legacy emacs to emacs-doom and in the process couldn't get my old jupyter setup running due to some
zmq
related errors (see https://github.com/emacs-jupyter/jupyter/issues/375#issuecomment-1611439318). I tested thenext
branch to circumvent that and it worked out nicely! I only noticed one bug which is a little annoying, but not super bad: the :display setting does not do anything, results are always as in:display plain
Example:
jupyter version (same for both)
```bash (conda) [user@computer ~]$ jupyter --version Selected Jupyter core packages... IPython : 7.29.0 ipykernel : 6.4.1 ipywidgets : not installed jupyter_client : 7.1.0 jupyter_core : 4.9.1 jupyter_server : 1.4.1 jupyterlab : 3.2.1 nbclient : 0.5.3 nbconvert : 6.1.0 nbformat : 5.1.3 notebook : 6.4.6 qtconsole : not installed traitlets : 5.1.1 ```Old setup
```python #+begin_src jupyter-python :session test :display html import pandas as pd df = pd.DataFrame([[0, 1, 2, 3], [4, 5, 6, 7]]) display(df) #+end_src ``` ```html #+RESULTS: #+begin_export htmlNew setup
```python #+begin_src jupyter-python :session test :display html import pandas as pd df = pd.DataFrame([[0, 1, 2, 3], [4, 5, 6, 7]]) display(df) #+end_src ``` ```md #+RESULTS: : 0 1 2 3 : 0 0 1 2 3 : 1 4 5 6 7 ``` Of course, pandoc has nothing to work with here, so the desired org-mode table output does not show up. ``` #+begin_src emacs-lisp (emacs-version) #+end_src #+RESULTS: : GNU Emacs 28.2 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.36, cairo version 1.17.6) : of 2023-01-03 ``` `doom/info` yields: ``` generated Jun 07, 2023 14:14:39 system "Manjaro Linux" Linux 5.15.114-1-MANJARO x86_64 x emacs 28.2 ~/Programme/doom-emacs/ doom 3.0.0-pre PROFILE=_@0 HEAD -> master 07fca7861 2023-05-30 19:39:04 -0400 ~/.doom.d/ shell /bin/bash features ACL CAIRO DBUS FREETYPE GIF GLIB GMP GNUTLS GPM GSETTINGS HARFBUZZ JPEG JSON LCMS2 LIBOTF LIBSYSTEMD LIBXML2 M17N_FLT MODULES NOTIFY INOTIFY PDUMPER PNG RSVG SECCOMP SOUND THREADS TIFF TOOLKIT_SCROLL_BARS X11 XDBE XIM XPM GTK3 ZLIB traits gui server-running chemacs-2.0 modules :config use-package :completion company vertico :ui deft doom doom-dashboard (emoji +unicode) hl-todo minimap modeline ophints (popup +defaults) (treemacs +lsp) (vc-gutter +pretty) vi-tilde-fringe workspaces zen :editor (evil +everywhere) fold snippets :emacs dired electric (undo +tree) vc :checkers syntax :tools (eval +overlay) lookup lsp magit pdf rgb tree-sitter :lang data emacs-lisp (ess +tree-sitter) latex (markdown +grip) (org +dragndrop +jupyter +hugo +present) (python +conda +cython +tree-sitter +lsp +pyright) (sh +tree-sitter) (web +tree-sitter) (yaml +tree-sitter) :config literate (default +bindings +smartparens) packages (zetteldeft) (rainbow-identifiers) (zotxt) (ob-tmux) (jupyter :recipe (:branch next)) unpin jupyter ```As per @nnicandro 's request I opened a new issue after first posting this here: https://github.com/emacs-jupyter/jupyter/issues/375#issuecomment-1580689834
As asked here the value of the variable
jupyter-org-mime-types
indeed looks normal: