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emdann / milopy

Python implementation of Milo for differential abundance testing on KNN graph
MIT License
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ValueError: Length mismatch #11

Closed DunxinShen closed 2 years ago

DunxinShen commented 2 years ago

Hi,

I was running the code in the quick start from the tutorial section and this line milo.DA_nhoods(adata, design="~ condition") gave me this error: ValueError: Length mismatch: Expected axis has 5 elements, new values have 119 elements. I am wondering whether it's something wrong on my side. The weird thing is that I wrote a script with milopy a while ago that used to work fine but did not run through when I tried to re-run it today, giving me a similar error. Please let me know if you need more information.

Thanks

emdann commented 2 years ago

Hi @sdxsysu, this error is caused by some update in the rpy2 package, but it should be fixed since https://github.com/emdann/milopy/pull/8 Could you try again after pulling the latest changes and reinstalling?

DunxinShen commented 2 years ago

It's working now! Thanks!