emdann / sc_target_evidence

Meta-analysis of drug target evidence in single-cell data
BSD 3-Clause "New" or "Revised" License
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Fix download of problematic stomach / brain files #10

Closed emdann closed 6 months ago

emdann commented 1 year ago

Brain files fail because of insufficient RAM even when requesting 700GB. Download of stomach files from cxg hangs forever, looks like something is wrong in the census side.

Try downloading datasets directly from cellxgene website or sfaira, then filtering and pseudobulking.

emdann commented 1 year ago

Fixed the stomach samples.