A bunch of diseases gets excluded in DE in disease analysis because no disease pseudobulk is left after filtering for low quality annotation, although in prev version of the pipeline there were cell types to do comparison:
To check
MONDO_0005575
MONDO_0006156
MONDO_0006249
MONDO_0024660
MONDO_0024661
MONDO_0024885
MONDO_0001056 # gastric cancer
A bunch of diseases gets excluded in DE in disease analysis because no disease pseudobulk is left after filtering for low quality annotation, although in prev version of the pipeline there were cell types to do comparison:
To check