[x] - cellontology_utils - functions to handle cell ontologies
[x] - preprocessing_utils - things like anndata2pseudobulk, adding similarity btw cell types to the pseudobulk objects, functions to save and read pseudobulk objects?
[x] - cxg_utils - functions to download data and metadata using cxg census
[x] - plotting_utils - functions to make diagnostic plots
[x] - de_utils - functions for DE analysis (cleaning data, running DE analysis with different regimes, saving outputs)
[x] - sc_evidence - transform DE analysis results to evidence for drug targets
[ ] - opentargets_utils - functions to clean OT datasets
cellontology_utils
- functions to handle cell ontologiespreprocessing_utils
- things likeanndata2pseudobulk
, adding similarity btw cell types to the pseudobulk objects, functions to save and read pseudobulk objects?cxg_utils
- functions to download data and metadata using cxg censusplotting_utils
- functions to make diagnostic plotsde_utils
- functions for DE analysis (cleaning data, running DE analysis with different regimes, saving outputs)sc_evidence
- transform DE analysis results to evidence for drug targetsopentargets_utils
- functions to clean OT datasets