responded to reviewer 3, #128

emhart / 10-simple-rules-data-storage

A repository for the 10 simple rules data sharing paper to be submitted to PLoS Comp Biology

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responded to reviewer 3, #128 #138

Closed emhart closed 8 years ago

emhart commented 8 years ago

Holding off on merging until I get a bit more feedback from folks.

fmichonneau commented 8 years ago

+1 for me

PBarmby commented 8 years ago

I'm fine with the response. Could make a few minor tweaks which might satisfy reviewer:

in response point out that rule 8 on privacy can be particularly important in biomed contexts
in manuscript add a few words to this effect

naupaka commented 8 years ago

I agree with @emhart but also with @PBarmby's suggestion about pointing out the existing privacy section as relevant to biomed data.

I also think we should add in a few more mentions of e.g. NCBI/EMBL as repositories for all types of sequencing data. Then I think we could respond to this comment from the review with a few different things, which might be more effective. I think this could go in the permanent identifier section (mention NCBI Accession.Versions vs GI identifiers, which are being phased out) and in the metadata section, where we can mention several tools for formatting and uploading metadata to, e.g., the NCBI SRA with mothur.

emhart commented 8 years ago

Thanks all! @naupaka I tried my best to incorporate your comments into the manuscript. This is a bit out of my realm of expertise so I'd love another set of eyes on it just to make sure it reads correctly. If so I think we can do one last pass and then I'll do the re-submission.

naupaka commented 8 years ago

Thanks! If you merge this @emhart I will take one more pass to check for typos and smooth out wording if needed. Probably easier than me trying to add commits on top of your PR.