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emmanuelparadis / ape

analysis of phylogenetics and evolution
http://ape-package.ird.fr/
GNU General Public License v2.0
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Some small improvements #111

Closed KlausVigo closed 6 months ago

KlausVigo commented 7 months ago

Hi @emmanuelparadis, a few little improvements. I hope these don't collide with your recent improvements. In comparePhylo I clean up after running layout. degree.phylo might be a bit slower, but should be save if a tree has not tip.label slot, like compressed trees. I think you solved this problem differently. To read.genBank I added an argument type to allow to download protein / amino acids. Kind regards, Klaus

emmanuelparadis commented 6 months ago

All good!

I edited a bit read.GenBank() since an if .... seemed redundant as type was already set. More tests might be useful too.

I updated the NEWS and incremented the version and pushed here.

Thanks! Emmanuel