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emmanuelparadis
/
pegas
Population and Evolutionary Genetics Analysis System
GNU General Public License v2.0
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drop = FALSE in ".[loci"creates issues with other function(s)
#41
courtiol
closed
5 years ago
1
read.loci() silently deleting samples on import
#40
emmanuelparadis
closed
5 years ago
5
some functions not installed
#39
willyard
closed
5 years ago
1
All NaN from Fst function
#38
darencard
closed
6 years ago
2
Fix loci subset method dispatch
#37
zkamvar
closed
6 years ago
1
hw.test fails if a locus contains all missing data
#36
zkamvar
closed
6 years ago
8
crash - address (nil), cause 'memory not mapped' on opensuse tumbleweed
#35
zjons
closed
6 years ago
1
created write.amova
#34
knausb
closed
6 years ago
3
First P value missing for hierarchical AMOVA with 2 or more tiers [new]
#33
ghost
closed
6 years ago
2
Plot opens graphics output but never plots anything, just sits there
#32
DiDeoxy
closed
6 years ago
1
Add new function getPhi()
#31
zkamvar
closed
6 years ago
1
problem with SNP without polymorphism from VCF
#30
frederic-michaud
closed
6 years ago
6
Expanding the file name of vcf file to be read to avoid segfault.
#29
frederic-michaud
closed
6 years ago
1
Session crash when loading vcf file with ~
#28
frederic-michaud
closed
6 years ago
2
add missing comma
#27
zkamvar
closed
6 years ago
2
fix levels for print.amova
#26
zkamvar
closed
6 years ago
2
Feature request: Calculate phi statistics for AMOVA
#25
zkamvar
closed
6 years ago
5
pop function exported in hw.test?
#24
EricArcher
closed
6 years ago
5
unexpected behavior when trying to install pegas with githubinstall()
#23
vinsondoyle
closed
7 years ago
3
Error when using haploNet(h) on Fasta file.
#22
jorgeamaya
closed
7 years ago
1
loci2genind and ploidy level?
#21
jgx65
closed
8 years ago
3
Problem with missing values in loci2genind
#20
mstetter
closed
7 years ago
3
Absent sigma/p value with multi-level amova plus warnings
#19
elizeng
closed
8 years ago
1
P values absent in some AMOVA runs with hierarchical levels
#18
CEMoffat
closed
8 years ago
2
error message with theta.msat
#17
kathfi
closed
8 years ago
1
error message with theta.msat
#16
kathfi
closed
8 years ago
5
fixing conversion from loci to genind - . treated as NA
#15
thibautjombart
closed
8 years ago
1
NAs in loci2genind "." treated as an allele
#14
thibautjombart
closed
8 years ago
1
when would hw.test produce NA?
#13
romunov
closed
8 years ago
1
conversion issue genind objects
#12
juance100
closed
8 years ago
1
enhancement for read.vcf function?
#11
lduvaux
closed
3 years ago
1
Potential bug / conversion issue
#10
thibautjombart
closed
9 years ago
3
as.romans not found in utils
#9
zkamvar
closed
9 years ago
1
Change util to utils in imports
#8
zkamvar
closed
9 years ago
1
The link to fstat in pegas Fst help is no longer valid
#7
thibautjombart
closed
9 years ago
6
hw.test.R problem with data set ncol > 170
#6
thierrygosselin
closed
9 years ago
2
filter out haplotypes by frequency
#5
emmanuelparadis
closed
9 years ago
5
haplotype network from the "haplotype.loci" class
#4
emmanuelparadis
closed
7 years ago
6
haploNet
#3
jhmarcus
closed
9 years ago
4
Fix rhs/data issue in amova
#2
zkamvar
closed
9 years ago
5
Implementation of hw.test as generic + methods
#1
thibautjombart
closed
9 years ago
3
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