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emo-bon / MetaGOflow

MGnify oriented implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded project
https://metagoflow.readthedocs.io
Apache License 2.0
7 stars 8 forks source link

Ro crate for the metaGOflow output #27

Closed hariszaf closed 1 year ago

hariszaf commented 1 year ago

This PR aims at building RO-crates of the metaGOflow output.

It requires the installation of rocrate as a dependency.

In general, the approach used is not the best way to go as we do not exploit the cwl descriptions. However, it does the job and we get valid ro-crates.

hariszaf commented 1 year ago

As it, we keep both the output directory and the .zip file with the complete ro-crate. It is my belief that we should remove either the output directory and keep just the .zip or vice versa. No strong opinion though.

jprmachado commented 1 year ago

The #26 and #24 should take into consideration the changes made by this PR