Hmmsearch has hard-coded 4 threads per chunk analysis

emo-bon / MetaGOflow

MGnify oriented implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded project

https://metagoflow.readthedocs.io

Apache License 2.0

7 stars 8 forks source link

Closed cymon closed 9 months ago

cymon commented 9 months ago

Is there are reason why the hmmsearch has hard-coded 4 threads per chunk analysis? tools/hmmer/hmmsearch/hmmsearch.cwl line:

82 - prefix: --cpu 83 valueFrom: '4'

Why not allocate total_number_of_threads/number_chunks per chunk analysis?

hariszaf commented 9 months ago

cymon commented 9 months ago

Thanks, closing...