emo-bon / MetaGOflow

MGnify oriented implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded project
https://metagoflow.readthedocs.io
Apache License 2.0
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run_wf.sh | $KEEP_TMP | -b #50

Open cymon opened 3 months ago

cymon commented 3 months ago

199 if [[ $KEEP_TMP != "" ]]; 200 then 201 echo "Keep temporary output directory." 202 mv ${TMPDIR} ${CWD} 203 else 204 rm -rf ${TMPDIR} 205 fi

Copying to the CWD means that multiple runs launched from the same mgf install fail when they all try to write to the same dir.